Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq78 165 2e-35 seq22 150 4e-31 seq20 116 8e-21 seq11 109 1e-18 seq27 96.9 7e-15 >seq78 Length=145407 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||||||||||||||| || | ||| || || ||||||||| Sbjct 113023 TTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATC 113082 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | |||||| || || ||||| || |||||||| ||||||||| || ||| | || Sbjct 113083 AGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCA 113142 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||||||| ||| || || || ||||| ||||| ||||| | ||| || ||||| Sbjct 113143 ATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGAAG 113202 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 113203 ATCTGCATCTT 113213 >seq22 Length=480975 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| || | ||| || ||||||||||| ||||| Sbjct 153772 ACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCT 153831 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| ||||| || | || || || || || |||||||| ||||| ||| || Sbjct 153832 CAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGG 153891 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| |||||||| ||| || || | || |||| |||||| | || || Sbjct 153892 AATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTCCAC 153951 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| ||||| || |||||||| ||||| || || |||||||| Sbjct 153952 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 153999 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 171880 ACCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCT 171821 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| |||||||| || || || || |||||||| | |||||| || || || Sbjct 171820 CAACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGG 171761 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| |||||| ||| || ||||||| | ||| || | |||||| Sbjct 171760 GATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGAC 171701 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 171700 GTCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 171653 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 154001 CCACCACGCAGACGCAATACCAAGTGCAATGTCGACTCCTTCTGAATGTTGTAGTCGCTC 154060 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| |||||||| || || || || |||||||| | |||||| || || || Sbjct 154061 AACGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGTTGCTGATCTGGAGGG 154120 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| ||| || ||||||| | ||| || | |||||| Sbjct 154121 ATGCCTTCCTTGTCTTGAATCTTTTGTTTGACATTATCGATCGAGTCGGACGGTTCGACG 154180 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 154181 TCCAATGTGATGGTCTTCCCCGTTAATGTCTTCACAAAGATCTGCAT 154227 >seq20 Length=529036 Score = 116 bits (128), Expect = 8e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 316993 TGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTC 317052 ||||| ||| | |||| |||| ||||||| | ||||| |||||||| || ||||| Sbjct 187326 TGCTCCACAAAGACAGTCTTCAATTCATCCTTCTTTGGGAATCCTTCCAATTGGCCGTTG 187385 Query 317053 ACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGA 317112 ||||||| | ||| || |||||||| ||| ||| || || ||||| | ||| || || Sbjct 187386 GCAATCGCACGCATAAGCGTCGACTTACCACAACCGTTAGGACCGCACAAACCGTAACGG 187445 Query 317113 TTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGA 317172 | || ||| || | ||||| ||||| || | |||| |||||||||| |||| Sbjct 187446 TGACCACGCTTGAGGCGCAGACGGGCATTGTTGAGCAAAATCATACCACCATAAGCCAAC 187505 Query 317173 GAGAACTCACAATCACACA 317191 ||||||||||| | |||| Sbjct 187506 GAGAACTCACAGTTGCACA 187524 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| |||| ||||||||||| || ||||||| |||||||||||||| | || | Sbjct 186496 CAAGCAATTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGATTAGCAGTGA 186555 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 | || | ||| || || ||||| ||||| |||||||| |||||||| |||| |||||| Sbjct 186556 TATCCAAATGCTCTTCAATGTGATGGAAGGCGTGCTGCGCCACGTACGCAAAACGCATGG 186615 Query 316274 TTGGATGCTTCCAAACGCTACCG 316296 || |||||||| ||| ||||| Sbjct 186616 CAGGGTGCTTCCACACGGTACCG 186638 >seq11 Length=740280 Score = 109 bits (120), Expect = 1e-18 Identities = 260/393 (66%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 273584 AATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGA 273643 ||||||||||| ||||||||| | |||| | | |||||||| || ||||| || Sbjct 452895 AATAATATCTTGCGGGTTGTAATTAGGAATGGAGCTCGACCAACCTGTTCCAATCCCTTC 452954 Query 273644 AGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATC 273703 |||||| || || || ||||||| ||||| || ||||| || |||||||| | Sbjct 452955 AGAACCGTTAACAAGCGCCATCGGGATGATTGGTACGTAATACTCTGGCTCAATGGACTG 453014 Query 273704 ACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT 273763 ||||| || | | || |||| | | ||| ||| | | | |||| || || ||| Sbjct 453015 GCCATCATCATCCAAATAAGTCAAGACATCATTATCAAGAGGATCAAAAATCTGTCTCGT 453074 Query 273764 CTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | | | |||||| ||||| ||||| | | ||| ||| ||| || ||||| || Sbjct 453075 CAACTGCTCCAGTTTTGTGAAGATGTAACGAGGACTTGCAGCGTCTTTTCCACCCATCAA 453134 Query 273824 CCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATC 273883 || | ||| || || || | || || | || |||||||| ||||| |||| Sbjct 453135 TCTGGTACCGAATTGGCCGTTTGGAGAGAGAAGATGAATATTGTTGCTGCCGACAAAATC 453194 Query 273884 CTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTG 273943 || ||||| || | || ||||| | | | | ||| ||||| ||||| || ||| Sbjct 453195 TTGCGCCATGTTGATAATTGTCCCGTTCAAGCTTTGCTCACCGTGATGATAAGCAGAGTG 453254 Query 273944 TTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 ||| | | || ||| || ||||| ||||| Sbjct 453255 TTCCGACACGTAGCCAGCCAATTGAGCTACCTT 453287 >seq27 Length=441917 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | |||| || | |||||| || || |||||||||||||| | Sbjct 63538 ACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 63597 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || | ||| || || |||||||||| ||| || || ||| || Sbjct 63598 CAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 63657 Query 282992 AATACC 282997 ||| || Sbjct 63658 AATTCC 63663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735444823120