Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=1145976 Score = 105 bits (116), Expect = 7e-18 Identities = 295/443 (67%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || ||||| ||||| || | |||||||| | ||| || | |||||| || || | Sbjct 132292 AAGCACGCAAAGTCACAGTGCAACCCTTCATCACGACTGATGAGTTCATTCGAGAAACTG 132233 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 | || ||||| | || || || || | ||| || || | |||| || || || ||||| Sbjct 132232 AGACCAGGCATGAGCCCACGCTTCTTCAACCAGAAGATGG-AGCAGAAGGAACCCGAAAA 132174 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT---A 23681 ||| || ||||| ||||||||||| |||| || ||| | || | | ||| | Sbjct 132173 GAAGATTCCCTCGACAGCCGCAAATGCCAAAATCCGTTCAGCATAGGCAGCAGCGCGCGA 132114 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 || | ||| || || |||| | |||||| | || || || ||||| || Sbjct 132113 GTCGCA---CCACTTCAATGCCCAACTGGCCTTCTTGGTCACGCATGGGATGGTTTCGAT 132057 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTA--TCTGTTATATATGTATCAATTAGTAAA 23799 || || | | | | |||| | ||| | || ||||| ||||| | || Sbjct 132056 GGCACGTAGCA--AGTGGTCCTTCTCGGTCGGGTCTTTGATGTATGTGTCAATCAA-AAG 132000 Query 23800 CTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 | | |||| ||| || ||||| |||||||| || ||||| || || ||||| || | || Sbjct 131999 CGAGTACACTTCGGAGTGAATGTTTTCAATGGCGATCTGGAATCCGTAAAAGCAGCGCGC 131940 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 |||| || ||| || ||| || || | | || | |||||||| ||||| ||||| Sbjct 131939 CTCAGGCACTTGCACTTCACTACTGAAATTCATCGCAAGGTTTTCGTTCACAATCCCATC 131880 Query 23919 ACTAGCAGCAAAGAAAG-CAAGA 23940 || ||||||||||| | ||||| Sbjct 131879 GCTGGCAGCAAAGAACGCCAAGA 131857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486174792000