Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq22 134 1e-26 seq78 127 1e-24 seq27 102 6e-17 >seq22 Length=480975 Score = 134 bits (148), Expect = 1e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| ||||||||||| || ||||| ||||||||||| ||||| | ||| | |||||||| Sbjct 154299 CGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCT 154358 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||||||||||| | | || | ||||| | ||| || |||| ||| | Sbjct 154359 TATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGA 154418 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || ||||| |||||||||||||| ||||| Sbjct 154419 TGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 134 bits (148), Expect = 1e-26 Identities = 124/157 (79%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| ||||||||||| || ||||| ||||||||||| ||||| | ||| | |||||||| Sbjct 171581 CGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGAATACCTTCCT 171522 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||||||||||| | | || | ||||| | ||| || |||| ||| | Sbjct 171521 TATCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGACGGTTCGACGTCCAACGTGA 171462 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || ||||| |||||||||||||| ||||| Sbjct 171461 TGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| ||||| ||||||||||||||| || || Sbjct 153769 CATACCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTC 153828 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || |||| |||||| || || || ||||||||||| ||||| | Sbjct 153829 GCTCAACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGG 153888 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||||||| || || || ||||||| | | || | ||| | || || Sbjct 153889 AGGAATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATAGAGTCCGAGGGCTC 153948 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| |||||||| || ||||| | |||||||| ||||| |||||| Sbjct 153949 CACATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| || |||||||| | || |||| ||||||||||| || ||||| Sbjct 153581 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 153640 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||||| ||| | ||||||||| ||| ||||||||||||| | Sbjct 153641 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 153700 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | ||| | | |||||| |||| || || ||||| || || | ||||||||| Sbjct 153701 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 153760 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 153761 AAGATCTGCAT 153771 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| || |||||||| | || |||| ||||||||||| || ||||| Sbjct 172071 TCCTTTTGAATATTGTAATCACTCAAAGTACGACCGTCTTCCAGCTGCTTACCCGCAAAA 172012 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| || ||||||| ||| | ||||||||| ||| ||||||||||||| | Sbjct 172011 ATGAGACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTCACGTTG 171952 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | ||| | | |||||| |||| || || ||||| || || | ||||||||| Sbjct 171951 TCAATAGAGTCCGAAGGTTCCACATCCAAAGTGATGGTCTTGCCAGTCAACGTCTTCACG 171892 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 171891 AAGATCTGCAT 171881 >seq78 Length=145407 Score = 127 bits (140), Expect = 1e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| || | || ||| | || |||| ||||| || ||||||| Sbjct 113021 CCTTTTGGATGTTGTAGTCCGAAAGCGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGA 113080 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| ||| |||||||||| ||| | |||||||| ||| ||||| ||||| | | Sbjct 113081 TCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT 113140 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||| |||| | | |||||| |||| ||| || ||||| ||||| || || || |||| Sbjct 113141 CAATGCTGTCCGAAGGTTCCACGTCCAGCGTGATGGTCTTGCCCGTAAGAGTTTTGACGA 113200 Query 44328 AGATTTGCAT 44337 |||| ||||| Sbjct 113201 AGATCTGCAT 113210 >seq27 Length=441917 Score = 102 bits (112), Expect = 6e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||| ||| |||||||||||||| ||||||||||| || | Sbjct 63539 CCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 63598 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| |||| ||||| || |||||||||| |||||||||||| | ||| Sbjct 63599 AGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 63657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989171532760