Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22 123 6e-23 seq113 105 2e-17 seq27 84.2 5e-11 >seq22 Length=480975 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| | || || ||| || ||| Sbjct 154224 CAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCCGAC 154165 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 154164 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 154105 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | || | ||| || ||| | Sbjct 154104 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 154045 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||| |||| |||| Sbjct 154044 CAGAAGGAGTCGACATTGCA-CTTG 154021 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| | || || ||| || ||| Sbjct 171656 CAGATCTTTGTGAAGACATTAACGGGGAAGACCATCACATTGGACGTCGAACCGTCCGAC 171715 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||||||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 171716 TCGATCGATAATGTCAAACAAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAGCAA 171775 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | || | ||| || ||| | Sbjct 171776 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACGTTGAGCGACTACAACATT 171835 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||| |||| |||| Sbjct 171836 CAGAAGGAGTCGACATTGCA-CTTG 171859 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| | || || ||| || ||| Sbjct 154452 CAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCCGAC 154393 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || ||||||||||| || ||||| || ||||| || || || Sbjct 154392 TCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAG 154333 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||||| ||||| || | ||| | ||| ||||| | Sbjct 154332 CGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAATATT 154273 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||| |||| |||| Sbjct 154272 CAGAAGGAATCGACATTGCA-CTTG 154249 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| | || || ||| || ||| Sbjct 171428 CAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACGTTGGACGTCGAACCGTCCGAC 171487 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || ||||||||||| || ||||| || ||||| || || || Sbjct 171488 TCGATCGACAACGTGAAGCAGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAG 171547 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| ||||| ||||| || | ||| | ||| ||||| | Sbjct 171548 CGTTTGATTTTTGCTGGAAAGCAGCTGGAAGACGGTCGTACTTTGAGCGACTATAATATT 171607 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||| |||| |||| Sbjct 171608 CAGAAGGAATCGACATTGCA-CTTG 171631 >seq113 Length=36633 Score = 105 bits (116), Expect = 2e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||| ||||| ||||| ||||| || || || ||| | || || |||||||| || | Sbjct 6206 CAGGTAAAACCATCACGCTCGACGTCGAGCCTTCGGACTCGATTGACAACGTCAAGCAGA 6147 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||||||||| |||||||| || || || ||||| || || ||||| || || || | Sbjct 6146 AAATTCAGGACAAGGAAGGAATTCCCCCAGATCAGCAGCGTCTGATCTTTGCTGGCAAGC 6087 Query 178066 AGCTCGAAGATGG 178078 |||| |||||||| Sbjct 6086 AGCTTGAAGATGG 6074 >seq27 Length=441917 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| ||||| || || || ||||| | || ||||| Sbjct 63854 AAAATGC---AGATTTTCGTGAAAACCCTCACGGGCAAGACCATCACATTGGATGTGGAG 63798 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || |||| ||| || || ||||| |||||||| |||||||| ||||| Sbjct 63797 CCATCGGACAGCATTGACAATGTCAAGCAAAAGATCCAGGACAAGGAAGG 63748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726881614320