Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq22 122 8e-23 seq27 100 3e-16 >seq22 Length=480975 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| |||||| || |||||||||||| Sbjct 153773 CCACCACGCAGACGAAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTATAGTCGCTC 153832 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | |||||| || ||||| |||| |||||||| || | ||| Sbjct 153833 AACGTGCGACCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGTTGATCAGGAGGA 153892 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || ||||||||||||| || | | | || ||| | |||||| Sbjct 153893 ATACCTTCCTTATCTTGGATTTTTTGCTTC-ACATTGTCAATAGAGTCCGAGGGCTCCAC 153951 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || |||||||| ||||||| |||||| || || ||||||||| Sbjct 153952 ATCCAAAGTAATCGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 154000 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| || ||||||||||| ||||||||| Sbjct 154229 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 154288 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || |||||||| || || || |||| |||||||| || | ||| Sbjct 154289 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 154348 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || || |||||| ||| | | | | |||| || || || Sbjct 154349 ATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGAC 154407 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || || || ||||| ||||| |||||||| Sbjct 154408 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 154455 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| || ||||||||||| ||||||||| Sbjct 171651 CCACCTCGCAGACGAAGCACCAAGTGCAATGTCGATTCCTTCTGAATATTATAGTCGCTC 171592 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || |||||||| || || || |||| |||||||| || | ||| Sbjct 171591 AAAGTACGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAAACGCTGTTGATCAGGAGGA 171532 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| ||| || || |||||| ||| | | | | |||| || || || Sbjct 171531 ATACCTTCCTTATCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCGGACGGTTCGAC 171473 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || || || ||||| ||||| |||||||| Sbjct 171472 GTCCAACGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 171425 >seq27 Length=441917 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || ||||| ||||||| || ||||||||||||||||| ||||| ||||| Sbjct 63535 ACCACCACCACGCAGACGCAACACCAAGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTC 63594 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| || | |||||||| || || ||||| ||||| || || | Sbjct 63595 CGACAGCGTGCGGCCGTCTTCCAATTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGG 63654 Query 41752 GGGAA 41756 |||| Sbjct 63655 AGGAA 63659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302381936000