Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq286 87.8 4e-12 seq2939 86.0 1e-11 >seq286 Length=985874 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 281826 TTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCA 281885 |||||| ||||| |||| || |||| ||||| ||||| || | ||| | || Sbjct 945630 TTATTGGAGCCGACAAAATCTTGTGCCATATTGACAATTGTTGAATGCAACGACGCTTCT 945571 Query 281886 CCGTGGTGATAGGCGCTGTGTTCGGCAACA-TAACCACTGAACTGTGCTACCTTCACGTC 281944 ||||||||||| || ||||||| | || || ||| | ||||||||| ||||| || Sbjct 945570 CCGTGGTGATAAGCTGTGTGTTC-ACTGCAGTAGCCAGCAAGCTGTGCTACTTTCACTTC 945512 Query 281945 TGATGTCAAGTTGCGTTTGAAA-GCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAAC 282003 || || |||||||| ||| ||||| | || || |||||||| ||| ||| | || Sbjct 945511 GTTCGTTAACTTGCGTTTCAAACACGCAA-ACAAGACCTTTCGTTGTGAAATCTTCAGAC 945453 Query 282004 CATCAACGACAGACGG 282019 |||||| || ||||| Sbjct 945452 CATCAATTACCGACGG 945437 >seq2939 Length=1921269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| ||||||| Sbjct 727391 GCCCGTCTAGCTCATTCGGTGGAGCGCAAGACTCTTAATATTGTGGTCGTGGTTTCGAGC 727332 Query 165770 CCCACGATGGGC 165781 || ||| | ||| Sbjct 727331 CCTACGGTTGGC 727320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057781144244060