Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3042 84.2 2e-11 >seq3042 Length=3267112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 204/307 (66%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 |||||||||||||| || || |||| || ||||| || ||||| || || || ||| Sbjct 2153836 ATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGA 2153777 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAA--TCGTTCCGCTA 17351 || ||||| || || || || || | | || ||||| | ||| || | || | Sbjct 2153776 AAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGCTGAAATTCAT--AGCCA 2153719 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 ||||||| || || || || || || || |||||||| || | | ||||||||| |||| Sbjct 2153718 GATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAAT 2153659 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 | |||| |||||| ||||||||| | || | || ||| | ||| | Sbjct 2153658 AGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCT 2153599 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 | | ||||| || || | ||||| || ||||| | ||| | ||| | | || | Sbjct 2153598 CAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCCACACATCGTGTTCCTGAA 2153539 Query 17532 TGGGGAA 17538 |||| || Sbjct 2153538 TGGGAAA 2153532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525144010160