Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq731 147 4e-31 >seq731 Length=3487 Score = 147 bits (162), Expect = 4e-31 Identities = 280/409 (68%), Gaps = 30/409 (7%) Strand=Plus/Minus Query 14189 GATTTTCACCACGGCACGAAGGTCATCGAAATAAATGACGGTACGCGTGTTATTTCCACG 14248 |||| ||||||||| | ||| | || || || || || || || |||||| || Sbjct 879 GATTATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACA 820 Query 14249 GTCGCAACCGCAATCGTCGGCATGGTCTGGACAGCCAGCGATGCGGATGC---CGAGACA 14305 || || ||||| || | |||||||| || | | ||||| ||||| || | Sbjct 819 GTAAGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTG--- 763 Query 14306 TTTCCCCTCAACGAGCCGGTACTGATTACCAATGTGCAGAGCGCCATTGCGAAAGCCGGT 14365 || |||||||| | ||||| ||| ||||| | |||| || ||||| | |||| | || Sbjct 762 TTCCCCCTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCG-GAAAACAGGC 704 Query 14366 AAAAAAGGCACTCTGTCAGCTTCCCTGCAGGCCATCGCCGACCAGTCAAAGCCTGTCACC 14425 | ||||| ||| | || ||| | || || |||||||| |||| || || ||| Sbjct 703 GAGTCCGGCACGCTGGCCCGCTCTCTGGATGCAATTGCCGACCAAGCAAAACCCGTGACC 644 Query 14426 GTTGTCGTGCGCGTTGCCGAAGGTACCGGAGACGATGCAGAAGCGCAGACCACGTCCAAC 14485 || || ||||||||||| | ||| || | |||||| | || || |||||| Sbjct 643 GTCGTTGTGCGCGTTGCTCAGGGT---------GAAACTGAAGCGGAAACAACCTCCAAC 593 Query 14486 ATTATCGGCGGC---ACGGATGAGAACGGTAAATACACCGGTATCAAGGCGCTGCTAACT 14542 |||||||||||| || | || |||||||| | || || || || |||||| || || Sbjct 592 ATTATCGGCGGCGTGACAGCTG---ACGGTAAAAAAACGGGCATGAAAGCGCTGTTATCT 536 Query 14543 GCCGAAGCGGTCAC----CGGCGTTAAGCCGCGCATTCTCGGTGTGCCG 14587 || || ||| | ||||||||||||||||||||| || |||||| Sbjct 535 GC----GCAGTCCCAGCTCGGCGTTAAGCCGCGCATTCTTGGCGTGCCG 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97871524908584