Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq112 208 6e-49 >seq112 Length=380982 Score = 208 bits (230), Expect = 6e-49 Identities = 498/741 (67%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 101600 TTAAAGTCATCAATGCATGAAACATTTCTAGCA--AATCTA-AGTGTTGGAAACGGTCTA 101656 || ||||||||||||| ||| || || | ||| | || |||||||| || | Sbjct 85137 TTGAAGTCATCAATGCTTGACGTCTTCAAAGGATTAATGTGCAGCGTTGGAAATGGACGT 85196 Query 101657 GGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCT 101716 || || |||||||| ||| ||| || | || | ||||| || |||||| || ||||| Sbjct 85197 GGCGTACGCGTCAATTGCTTTTGTAGTGGCTCGACGTGATTTAGATAGATATGCGCATCG 85256 Query 101717 CCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTT 101776 || || |||||||| || ||||| ||| ||| || ||||||| | | || Sbjct 85257 CCAATGACGTGGATAAATTCACCAGGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTC 85316 Query 101777 AAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGA 101836 | || | ||||| ||||| ||||||||||| || | |||||| || || || | ||| Sbjct 85317 AGCAGCGCGTAGCTGGCAATATTAAATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGG 85376 Query 101837 TACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGC 101896 |||| ||||| || |||| ||||| ||||||||||| | || | || ||||| Sbjct 85377 TACATCTGACATGACAGCTCTCCATTTGCTACATAAAATTGGCAAAACATGTGGCAAGGT 85436 Query 101897 GGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 || || |||||| | ||||| | ||||| || ||| | || | | ||| Sbjct 85437 GGTAATGCCATTTCGTTGAGGTCTGCAGGGTTCCACGCCGACAGGATAATGCGACGGTCT 85496 Query 101957 GTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTA 102016 || || | | || | | ||| | || || | || ||||| |||| || || Sbjct 85497 GTTGGACTCTTACGTAGCTTTTGAATAACCTCTTCAAGCTGATCAACACCTTGACCAGTA 85556 Query 102017 TAATCGCGCCCAACACCTT--TATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACA 102074 ||||| || | || || |||||| ||||| ||||| | ||| ||||| ||||| | Sbjct 85557 TAATC-CG-CATGCATGTTCGTATATTTAGCTCCAAAATGACGCCATTGAAAGCCATAAA 85614 Query 102075 CAGGTCCAAGATCTCCTTCATCTC-TGTCATAAAAACCAAGTTTATCTAAAAATGATCTA 102133 | ||||||||||||||| | |||| ||| | | ||| | |||||| | | | | Sbjct 85615 CCGGTCCAAGATCTCCTACTTCTCGAGTC-TGGAGACCTCGGCTATCTAGATACTCACGA 85673 Query 102134 GATCCATTCGCATCCCAAATGTGCA-CGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGA 102192 |||||||| ||||||| ||||| | || ||||| ||| || | || Sbjct 85674 GATCCATTGCCATCCCATATGTGAATATCCTTTTGCTG-CAGCGTTTGAGCATTTGTGTC 85732 Query 102193 TCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 ||| || ||||||||||| || || || | ||||||| ||| ||||| || || ||||| Sbjct 85733 TCCACTAATAAACCACAATAGCTCCTCCGCTACACCTCGCCAGAATACCCTTTTGGTAGT 85792 Query 102253 TAAAAGTGGAAATTCATTTT---CTAAACTAAACCTAGACTGTGTTCCAAAAATACTCAG 102309 | | ||||||| |||||| ||| |||||||| || | |||||| || ||| Sbjct 85793 CAGCAATGGAAATACATTTTTTCTTAAGCTAAACCTCATTTGAGCTCCAAATATTGACAG 85852 Query 102310 TGTTCCAGTCCCTGTTCTGTC 102330 || || || ||||| | ||| Sbjct 85853 CGTACCCGTGCCTGTACGGTC 85873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237278507662