Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3042 214 2e-50 seq653 206 3e-48 >seq3042 Length=3267112 Score = 214 bits (236), Expect = 2e-50 Identities = 404/587 (69%), Gaps = 13/587 (2%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| | ||| || || | |||||| | || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 |||||| ||||||||||| || || ||| ||||| || || || ||||| || ||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTG 2153974 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTG 24322 | ||||| || | || || || ||| | | | || || ||| ||||| | Sbjct 2153973 CAGCAAAAGCTAACAGCCTCTCCGGATAT--GAAGATACTCGTGGATCGCACCACTTAAG 2153916 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 ||||||| || || ||| | || ||||| || || || || ||| || |||| || Sbjct 2153915 CGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTC 2153856 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 || ||| | || || | ||| ||||| || | ||| ||||| ||||| ||||| Sbjct 2153855 CTTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAAT 2153796 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 || ||||| || |||||||| ||||||||||| | |||||| | | ||| ||||| | Sbjct 2153795 ATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATT 2153736 Query 24503 AC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | ||| || | || | ||||||||| || ||||| ||||| ||||| ||||| || Sbjct 2153735 GCTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCA 2153678 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 24620 | ||||| || |||||||| |||| ||| || | ||| || || | || Sbjct 2153677 AGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCG 2153618 Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 | || ||| | ||| || ||||||| || || || || ||||| || ||||| | | Sbjct 2153617 TGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGC 2153558 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || | || || | ||||| ||||| | || || | ||| ||||| Sbjct 2153557 CACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 >seq653 Length=2021493 Score = 206 bits (228), Expect = 3e-48 Identities = 980/1538 (64%), Gaps = 37/1538 (2%) Strand=Plus/Plus Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 |||||| || | ||| || | || |||| || ||| ||||| || || | || || Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274 ||| || |||||||| ||||| || ||||| || |||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 53275 TCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 | | ||| ||||| | | || | || || | ||||||| |||||| ||||| Sbjct 711684 CCGTAAACC--ATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGAC 711741 Query 53333 GGTACA---ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | | | || || | ||| || || || || |||||| Sbjct 711742 GATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGG 711801 Query 53390 TATGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| ||||| || ||| | ||| | || | ||| || || | | | | Sbjct 711802 AATGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTTCCATGGAAGAAT 711859 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 | ||||| || || || || || ||||| || || | || | || ||||| | | Sbjct 711860 AGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGT 711919 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 |||| | |||||||||||| || || | ||| || || ||||| |||| |||| |||| Sbjct 711920 AATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTC 711979 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | | || || ||||||||||| | ||||||||||| | ||| || | || || | Sbjct 711980 GCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAA 712039 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA 53687 |||| | | || ||| ||||| || | || ||| | | ||||| | || Sbjct 712040 GGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCAT 712099 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 | ||||| | ||| || | |||||||| ||| ||||| || || |||| | | | Sbjct 712100 TCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAG 712159 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 ||||| || | || ||| | ||| || | || || || | |||||| || | Sbjct 712160 TATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGT 712219 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | |||| || || || || || || || | || ||||||||||||||| | Sbjct 712220 TCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 53927 || | ||| || ||| | |||| || || | ||| | | | | || Sbjct 712280 CGTCCAGAATAGCAAACCATAGCTGCTGAGCATTAATCGTT--TTTCGAGCACGTCCATC 712337 Query 53928 TT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT-GTCCAATCCAG 53984 | ||||| ||||| ||| || || || || ||||| |||| || | ||||| Sbjct 712338 CTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAG-CATTCGTAAAGTCCAG 712396 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC-ACTCGTTTCATAAA 54042 | ||| | |||||| | | ||||| || | || |||| || || |||||||| Sbjct 712397 GCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCAT--TCGCTTCGACGCGCTTCATAAA 712454 Query 54043 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 |||||| || ||||| || || ||| || | ||| | || | |||| ||| || || Sbjct 712455 GAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGT 712513 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 ||||||| | ||| || || | | || ||| | |||||||||||| || || || | Sbjct 712514 GATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAG 712573 Query 54162 TCATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || ||| ||| || || || || ||||| | |||| ||| || | |||| | Sbjct 712574 -CA-AACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAA 712631 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTC 54278 ||| | |||||||||||| || ||||| |||| || ||||| ||| || || || || Sbjct 712632 AACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGA-ATGTAACTGT 712690 Query 54279 CACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | ||||| || || || | || ||||| || ||| ||| || || | | Sbjct 712691 TTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACG 712750 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | ||| |||| | |||||||| || || ||||| ||||||| ||| | |||| Sbjct 712751 CACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAA 712810 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || || | ||| |||| || || ||||| || | || || | ||||| | Sbjct 712811 AGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGG 712870 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 |||| | |||| || | | | ||| ||||||| || | | || || | | Sbjct 712871 TAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGT 712930 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 ||||||||| || ||||| | | ||| || ||||||| || || | || | | Sbjct 712931 GAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAA----CTTTTCCA 712986 Query 54579 TTTTCA-GCAAG---TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 ||| || | ||| || | || | || ||||| |||||||||| || |||| Sbjct 712987 TTTACACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAG 713046 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 || || ||||| ||||| |||| ||||||| ||| || Sbjct 713047 TCACGGTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698133153760