Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq321 100 2e-16 seq252 91.5 1e-13 >seq321 Length=1809241 Score = 100 bits (110), Expect = 2e-16 Identities = 155/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || ||||||||||||||||| || || | | || || ||||| ||||| Sbjct 557158 GTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCGAGCTGCTTGCCA 557217 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || | ||||||||| || | ||||||||||| || || || || Sbjct 557218 GCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTCTGCTTG 557277 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | | || |||||| |||| || ||||||||||| || | || Sbjct 557278 ACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTGCCTGTAAGGGTC 557337 Query 21159 TTGACAAATATTTGCATTTTGAATC-TCTTATAAATGGCG 21197 ||||| || || |||||||| ||| | | | |||||||| Sbjct 557338 TTGACGAAAATCTGCATTTTCTATCATTTGAAAAATGGCG 557377 >seq252 Length=912309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| |||||||| ||||| || |||| | || | ||||| ||||| ||||| || ||| Sbjct 785551 CCTTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 785610 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | | ||||||||| || | |||||||| || || ||||| || || | | Sbjct 785611 TCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGT 785670 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | | ||| || ||| |||| || |||||||||||||| || || || |||| Sbjct 785671 CAATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAA 785730 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 785731 AAATCTGCAT 785740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422242927449992