Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq731 125 2e-24 >seq731 Length=3487 Score = 125 bits (138), Expect = 2e-24 Identities = 179/251 (71%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 17658 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGAGGGCACCCGCGTCATTTCCACC 17717 || ||||| ||||| |||| || | ||||| ||||| ||||||||| ||||| || Sbjct 879 GATTATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACA 820 Query 17718 GTATCCACGGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCAGATGCGGAAACCTTC 17777 ||| |||||| ||||| | |||||||| || | | |||||||||||| ||| Sbjct 819 GTAAGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTGTTC 760 Query 17778 CCCCTCAATAAACCTGTGCTGATTACCAATGTGCAGAGCGCAATTTCAAAGGCCGGTAAA 17837 |||||||||||||| || ||| ||||| | |||| || ||| | ||| | || | Sbjct 759 CCCCTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCGGAAA-ACAGGCGAG 701 Query 17838 AAAGGCACGCTGGCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAACCGGTCACCGTT 17897 ||||||||||| || || | || || || ||||| ||||||| || ||||| Sbjct 700 TCCGGCACGCTGGCCCGCTCTCTGGATGCAATTGCCGACCAAGCAAAACCCGTGACCGTC 641 Query 17898 GTCATGCGCGT 17908 || ||||||| Sbjct 640 GTTGTGCGCGT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107371968165420