Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3042 187 3e-42 seq252 86.0 6e-12 >seq3042 Length=3267112 Score = 187 bits (206), Expect = 3e-42 Identities = 405/599 (68%), Gaps = 24/599 (4%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || |||||| | || ||||| || | | || |||||| |||||||| ||||| || Sbjct 2153520 CGCTTCGTGCTCTTTCCCATTCAGGAACACGATGTGTGGCAGATGTACAAGAAGGCGGAA 2153579 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC-----GACTGGG 116717 || ||||||||||| | ||||| | || || || |||||| | ||||||| Sbjct 2153580 GCCTCGTTCTGGACAGCTGAGGAACTCGATCT-----AGTACACGACCTTAAGGACTGGG 2153634 Query 116718 AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCA 116777 || | | ||||||||||| |||| || ||||| ||||| || |||||||| || | Sbjct 2153635 CAAGCCTTACAAACAACGAGCGCTATTTTATTAAGCATGTGCTTGCTTTTTTCGCAGCTA 2153694 Query 116778 GCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCG 116837 | || || || ||||| || ||||||| | |||| | || ||||||||| | | Sbjct 2153695 GTGATGGAATTGTCAATGAAAATCTGGCTATGAATTTCAGCAATGAAGTGCAGGTGCCAG 2153754 Query 116838 AGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATT 116897 |||| || || |||||||||||||| ||||| || ||||| | |||||||| |||||| Sbjct 2153755 AGGCTCGCTGTTTCTACGGCTTTCAAATCGCTATTGAGAATATTCACTCGGAGGTGTATT 2153814 Query 116898 CGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCA 116957 || || ||||| ||||| | || |||||| || | | ||| || | Sbjct 2153815 CGCTTCTTATCGATACGTATATCAAGGACGCGATTGAGAAGGACCATCTATTGCGTGCAA 2153874 Query 116958 TCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT---GCGCTG-GATCGCC 117013 | || || || || ||||||| | | || || | |||||||| | | || |||| | Sbjct 2153875 TTGAAACCATCCCTTGCGTCACAAAAAAAGCTCATTGGGCGCTTAAGTGGTGCGATCCAC 2153934 Query 117014 GGCAGAGAGGCCGCCT-TCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 ||| | | | || | ||| | ||| | || || || || || ||||| | || Sbjct 2153935 ----GAGTATCTTCATATCCG-GAGAGGCTGTTAGCTTTTGCTGCAGTAGAGGGTATTTT 2153989 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 || || ||| ||| | | || |||||||| ||||| || || || ||||| || || Sbjct 2153990 TTTCTCAGGCTCATTCTGCTCAATCTTTTGGCTTAAGAAGCGTGGTCTGATGCCTGGTCT 2154049 Query 117133 --GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 | ||||| || |||||||| |||| || ||| |||| |||||||| || Sbjct 2154050 TAGCTTTTCA--AATGAGCTCATTAGTCGGGATGAAGGTATGCACACGGACTTTGCTTG 2154106 >seq252 Length=912309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || ||| | | Sbjct 785740 ATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATCACGTTGGATGTGGAACCTTCT 785681 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| ||||||||| || || || || || || | |||||| Sbjct 785680 GACAGCATTGACAATGTCAAGCAAAAAATTCAGGATAAGGAAGGTATTCCACCTGACCAG 785621 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| ||||| || || | || |||| ||||||||| Sbjct 785620 CAGCGCTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGATCCCTTGCAGACTACAAC 785561 Query 40870 ATCCAGAAGG 40879 || ||||||| Sbjct 785560 ATTCAGAAGG 785551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198835961120