Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq112 159 2e-34 >seq112 Length=380982 Score = 159 bits (176), Expect = 2e-34 Identities = 414/620 (67%), Gaps = 12/620 (2%) Strand=Plus/Plus Query 97003 AGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTC 97062 || ||||| || || | || || ||||| | |||| | || | || | |||||| Sbjct 85179 AGCGTTGGAAATGGACGTGGCGTACGCGTCAATTGCTTTTGTAGTGGCTCGACGTGATTT 85238 Query 97063 ACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACA 97122 | ||| || || ||||| || | ||| |||||||| ||||| |||| |||| || Sbjct 85239 AGATAGATATGCGCATCGCCAATGACGTGGATAAATTCACCAGGTTCTAATCCAGTCACT 85298 Query 97123 TGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCC 97182 || || | | || || | || | ||||| ||||| ||||| ||||| || || ||| Sbjct 85299 TGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTAAATGGCACGCCAAGCCCC 85358 Query 97183 ATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGA 97242 || || || || | ||| || | |||||| || |||| ||||| |||||||| || Sbjct 85359 ATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCATTTGCTACATAAAATTGG 85418 Query 97243 CTCAATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCAC 97300 | || | || || || || || ||||||| ||| | ||| ||||| || Sbjct 85419 CAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTG--AGGTCTGCAGGGTTCCACGCCG 85476 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAAT- 97359 ||| | || | | || ||||| | | ||| | | ||| | || ||| || Sbjct 85477 ACAGGATAATGCGACGGTCTGTTGGACTCTTACGTAGCTTTTGAATAACCT-CTTCAAGC 85535 Query 97360 TGATCAACGCCTTCTCCACCATAATTGTGCTT--AAGACCTTGATATTCTGCTCCAAAAT 97417 |||||||| |||| ||| ||||| || | | | | | ||||| |||||||||| Sbjct 85536 TGATCAACACCTTGACCAGTATAATCC-GCATGCATGTTCGT-ATATTTAGCTCCAAAAT 85593 Query 97418 GCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAA 97477 | | |||||| || |||||||| |||||||| |||||| |||||| | || ||| Sbjct 85594 GACGCCATTGAAAGCCATAAACCGGTCCAAGATCTCCTACTTCTCGAGTCTGGAGACCTC 85653 Query 97478 GCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCA 97536 | |||||| ||| | ||||||||| ||||||| ||||| | | || |||||| Sbjct 85654 GGCTATCTAGATACTCACGAGATCCATTGCCATCCCATATGTGAATATCCTTTTGCTGC- 85712 Query 97537 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTC 97596 ||| || | || ||| || ||||||||||| | || ||| | ||||||| | Sbjct 85713 AGCGTTTGAGCATTTGTGTCTCCACTAATAAACCACAATAGCTCCTCCGCTACACCTCGC 85772 Query 97597 CAAAATACTCTCTTAGTTGT 97616 || ||||| || || || || Sbjct 85773 CAGAATACCCTTTTGGTAGT 85792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346770636028340