Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq112 122 1e-22 seq321 93.3 6e-14 >seq112 Length=380982 Score = 122 bits (134), Expect = 1e-22 Identities = 410/631 (65%), Gaps = 13/631 (2%) Strand=Plus/Plus Query 205334 TTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACAT 205393 |||||||||| ||| ||||| ||||| |||| || | | | ||||| | || Sbjct 85183 TTGGAAATGGACGTGGCGTACGCGTCAATTGCTTTTGTAGTGGCTCGACGTGATTTAGAT 85242 Query 205394 ATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTG 205453 | ||||| |||| ||||| || ||||||||| |||| ||| ||| | || | Sbjct 85243 AGATATGCGCATCGCCAATGACGTGGATAAATTCACCAGGTTCTAATCCAGTCACTTGAG 85302 Query 205454 CAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATAT 205513 ||| | | |||| | || || |||| ||||||||| || || | ||||| | Sbjct 85303 CAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTAAATGGCACGCCAAGCCCCATGT 85362 Query 205514 CAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTA 205573 | || || | ||| ||||| ||||||| || | | ||| ||||| |||||| Sbjct 85363 CGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCATTTGC---TACATAAAATTGG- 85418 Query 205574 CAAAACAA-TGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTT 205632 ||||||| || |||||||||| |||| | | | ||| ||| ||||| || | Sbjct 85419 CAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTCTGCAGGGTTCCACGCCG-- 85476 Query 205633 AATATTATATTTCTAGATTCAGGtttattttt---tattttatttatAATATGTGTTAAT 205689 | | ||| | | | || | | | | || || || | |||| | | | Sbjct 85477 -ACAGGATAATGCGACGGTCTGTTGGACTCTTACGTAGCTTTTGAATAACCTCTTCAAGC 85535 Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 ||||||| |||||| ||||||| | || ||| | |||||||||| ||||||||| Sbjct 85536 TGATCAACACCTTGACCAGTATAATCCGCATGCATGTTCGTATATTTAGCTCCAAAATGA 85595 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGt 205809 ||||||||||| |||||||| || || | ||| ||| ||| || | | | ||| || Sbjct 85596 CGCCATTGAAAGCCATAAACCGGTCCAAGATCTCCTACTTCTCGAGTCTGGAGACCTCGG 85655 Query 205810 ttttttatatattttaatgatccattttcatcccaaatatggat-tcctttattttttaG 205868 | | || ||| | |||||||| ||||||| || || || |||||| | | || Sbjct 85656 CTATCTAGATACTCACGAGATCCATTGCCATCCCATATGTGAATATCCTTT-TGCTGCAG 85714 Query 205869 AATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCA 205928 | | | ||| || |||| |||||||| |||| || || | | |||| ||| Sbjct 85715 CGTTTGAGCATTTGTGTCTCCACTAATAAACCACAATAGCTCCTCCGCTACACCTCGCCA 85774 Query 205929 AAACATTGATTTTGTTGTAAATAATGGAAAT 205959 || | ||| || || | ||||||||| Sbjct 85775 GAATACCCTTTTGGTAGTCAGCAATGGAAAT 85805 >seq321 Length=1809241 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || |||||||| || || || | || | || | Sbjct 557355 AATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAGCCGTC 557296 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| ||| | || ||||||||||| || || |||||||| |||||||| || Sbjct 557295 GGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTGACCA 557236 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || |||||||| || || || | || ||| | || || | | || ||||| Sbjct 557235 GCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGACTATAA 557176 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| ||||| || || | ||| | || || ||| | || |||||| Sbjct 557175 CATTCAGAAAGAGTCGACGCTTCATCTTGTATTGCGTCTGCGTGGTGGT 557127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755426140601600