Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq321 98.7 9e-16 seq252 86.0 5e-12 >seq321 Length=1809241 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| |||||||| || || | ||| || ||| |||||||| || ||| Sbjct 557158 GTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCGAGCTGCTTGCCA 557217 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||||||||| || || || || || |||||||| |||||| || || Sbjct 557218 GCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGAATTTTCTGCTTG 557277 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | | |||||| ||| || || | || | || ||||| || || || Sbjct 557278 ACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTGCCTGTAAGGGTC 557337 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 557338 TTGACGAAAATCTGCAT 557354 >seq252 Length=912309 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| || |||||| | || | |||||||| || || || || || ||||| Sbjct 785585 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTT 785644 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || ||||||||| || || | || | | |||| | || || || | || | Sbjct 785645 ATCCTGAATTTTTTGCTTGACATTGTCAATGCTGTCAGAAGGTTCCACATCCAACGTGAT 785704 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||||||||| ||| || ||||||||||||||| Sbjct 785705 GGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCATG 785741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813681532104