Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq321 105 8e-18 seq252 98.7 1e-15 >seq321 Length=1809241 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | ||| | || ||| || ||||| || || || || ||||| || | Sbjct 557139 ACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCC 557198 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || || ||||||||||| | || | | ||||| Sbjct 557199 ATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTT 557258 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||||| || |||| | | | || | |||| || ||||| || | ||||| Sbjct 557259 GTCCTGAATTTTCTGCTTGA-CATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGA 557317 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| ||||| || || ||||| || || || |||||||| Sbjct 557318 TGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 >seq252 Length=912309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || || || | || | || || |||||||| |||||||| | Sbjct 785551 CCTTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 785610 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | ||||||||||| | || | | ||||| ||| |||||||| |||| | | | Sbjct 785611 TCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGA-CATTG 785669 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| | ||||||||| | ||||||||| ||||| || | ||||| ||| Sbjct 785670 TCAATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACA 785729 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 785730 AAAATCTGCAT 785740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571794998909360