Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3042 141 9e-29 >seq3042 Length=3267112 Score = 141 bits (156), Expect = 9e-29 Identities = 374/566 (66%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | |||||||| || |||| ||||| |||| ||| || | ||| ||||||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAA 2154055 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | ||||||| ||||| || || || || |||| |||||| || | | ||||| || | Sbjct 2154054 AGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCCTG 2153995 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | || || ||||| || ||||| ||||| || | || | ||| || | | | Sbjct 2153994 AGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTC--CGGA---TATGAAGA 2153940 Query 16407 tactt-----tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 |||| || ||| || ||||||| ||||||| | | || || ||| | Sbjct 2153939 TACTCGTGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGT 2153880 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || |||||| |||| || | || || | || ||||| ||||| || || Sbjct 2153879 TTCAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGATAAG 2153820 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | ||||| || || ||||||||||| || || || ||||| || || || || | Sbjct 2153819 AAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCG 2153760 Query 16582 AGCTTCGGATATTTGTACTTCAGAG-TAAAACCTTTCT-GCTAAGTTTTCGTTAACTATT 16639 ||| || | | || |||||| | | ||| || | || | ||||| || || ||| Sbjct 2153759 AGCCTCTGGCACCTGCACTTCATTGCTGAAA--TTCATAGCCAGATTTTCATTGACAATT 2153702 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAA 16699 ||||| |||||||| ||||| ||||| | || |||||||||| ||||| | || | Sbjct 2153701 CCATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTA 2153642 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 || || |||||| || || | | || ||||| || || | ||||| || || Sbjct 2153641 AGGCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAG 2153582 Query 16760 GCAACAGCCTTTTTATACATTTTCCA 16785 || | ||||| || ||||| | ||| Sbjct 2153581 GCTTCCGCCTTCTTGTACATCTGCCA 2153556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493719213200