Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq112 201 9e-47 >seq112 Length=380982 Score = 201 bits (222), Expect = 9e-47 Identities = 437/647 (68%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 19977 AGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAG 20036 ||| || || || || || ||| | || |||||||| ||| | | || ||| || Sbjct 85874 AGACCGTACAGGCACGGGTACGCTGTCAATATTTGGAGCTCAAATGAGGTTTAGCTTAAG 85815 Query 20037 AAA---TGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 ||| || |||||| || | ||||| ||| ||||||| ||| ||| || | || || Sbjct 85814 AAAAAATGTATTTCCATTGCTGACTACCAAAAGGGTATTCTGGCGAGGTGTAGCGGAGGA 85755 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAG-TTA 20152 | |||| |||||||||| ||| |||||| || ||| | || ||||||| || Sbjct 85754 GCTATTGTGGTTTATTAGTGGAGACACAAATGCTCAAACGCT-GCAGCAAAAGGATATTC 85696 Query 20153 AGATTTGG-AGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGT 20211 | || ||| | ||| |||||||| | | | || | ||| || | | | || Sbjct 85695 ACATATGGGATGGCA-ATGGATCTCGTGAGTATCTAGATAGCCGAGGTCTCCAGACTCGA 85637 Query 20212 CAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATAT 20271 ||| || ||| | || || || ||||| ||||||||| | |||||||||||| ||||| Sbjct 85636 GAAGTAGGAGATCTTGGACCGGTTTATGGCTTTCAATGGCGTCATTTTGGAGCTAAATAT 85577 Query 20272 GTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT--- 20328 ||||| | | ||||| ||| ||||| || ||||| | || | |||||| Sbjct 85576 ACGAACATGCATGCGGATTATACTGGTCAAGGTGTTGATCAGCTTGAAGAGGTTATTCAA 85517 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388 || || ||| || |||| ||| | | ||||| | | || |||||| || | Sbjct 85516 AAGCTACGTAA---GAGTCCAACAGACCGTCGCATTATCCTGTCGGCGTGGAACCCTGCA 85460 Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 || | |||||| || || || || || ||| | ||||||||||| || || ||| Sbjct 85459 GACCTCAACGAAATGGCATTACCACCTTGCCACATGTTTTGCCAATTTTATGTAGCAAAT 85400 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 || |||| ||||| ||||| ||||| || || || ||||| || || || || || Sbjct 85399 GGAGAGCTGTCATGTCAGATGTACCAACGCTCGGCCGACATGGGGCTTGGCGTGCCATTT 85340 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 |||||||| || || |||||||| ||| | | |||| || || || | ||| || | Sbjct 85339 AATATTGCCAGCTACGCGCTGCTGACGCGTCTTGTTGCTCAAGTGACTGGATTAGAACCT 85280 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCA 20615 ||||| || ||||| ||| || || |||||||| || || ||||| Sbjct 85279 GGTGAATTTATCCACGTCATTGGCGATGCGCATATCTATCTAAATCA 85233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399168616696090