Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq252 116 3e-21 seq321 95.1 1e-14 >seq252 Length=912309 Score = 116 bits (128), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCAGTTGTTTTCCGGCG 45202 ||||||||||||||||||| | || | ||||| || || || || || || ||| Sbjct 785551 CCTTCTGAATGTTGTAGTC-TGCAA---GGGATCGGCCATCCTCAAGCTGCTTGCCAGCG 785606 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || ||||| ||||| ||||| || || | ||| ||||| ||| |||||||||||| || Sbjct 785607 AAAATCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACA 785666 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTC 45322 | | |||||| | ||||| |||| || || |||||||| |||| ||||||| Sbjct 785667 TTGTCAATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTC 785726 Query 45323 ACAAAGATTTGCATG 45337 ||||| || |||||| Sbjct 785727 ACAAAAATCTGCATG 785741 >seq321 Length=1809241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| | || ||||| ||| ||||||||||| ||||| || || | || Sbjct 557143 AATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCT 557202 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || |||| ||||| ||||| || || | ||| ||||||||| Sbjct 557203 TCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCC 557262 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||||| || | | ||||||| |||||| |||| || || ||| Sbjct 557263 TGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTC 557322 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||| || || || ||||| || Sbjct 557323 TTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395059975036402