Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3042 152 5e-32 >seq3042 Length=3267112 Score = 152 bits (168), Expect = 5e-32 Identities = 308/444 (69%), Gaps = 20/444 (5%) Strand=Plus/Minus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 || ||||| | |||||| || || |||||||| | | || ||||||| || || || Sbjct 2154085 CCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTTC 2154026 Query 14285 tttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 || | |||||| |||| ||| |||||| || || || || || ||||| ||||||||||| Sbjct 2154025 TTAAGCCAAAAGATTG-AGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 14344 CGCTATTAATCGTTCTCC--AAACGATGCTTTT--TTGTTCGATATCCATTTTCTAGCCC 14399 |||| | | ||||| | | || | | | | | ||| ||| || |||| Sbjct 2153966 AGCTAACAGCC--TCTCCGGATATGAAGATACTCGTGGATCGCA--CCACTTAAGCGCCC 2153911 Query 14400 ATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCT 14459 | | || ||||||| | | || || |||||||| ||| |||| ||| ||||||| Sbjct 2153910 AATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCT 2153851 Query 14460 CTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGT 14516 | | | | ||||| || | ||||| ||||| |||| | |||| || ||||| || | Sbjct 2153850 CAATCGCGTCCTTGATAT--ACGTATCGATAAG-AAGCGAATACACCTCCGAGTGAATAT 2153794 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC--TGA 14574 | || ||||| || ||||| || || ||||| | ||| |||| | || || || || Sbjct 2153793 TCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGC 2153734 Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14634 ||| || | |||| ||||||||| || || |||||||||||||| ||||| || | Sbjct 2153733 TGAAATTCATA--GCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAG 2153676 Query 14635 TATGTTTTTAATAAAGTATTGCTC 14658 | | |||||||| || |||| Sbjct 2153675 CACATGCTTAATAAAATAGCGCTC 2153652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326535290160