Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq653 187 2e-42 seq321 156 4e-33 seq3042 143 2e-29 seq252 102 7e-17 >seq653 Length=2021493 Score = 187 bits (206), Expect = 2e-42 Identities = 1157/1844 (63%), Gaps = 45/1844 (2%) Strand=Plus/Plus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || |||||||||||||| || ||| | ||||| || || || || || ||||| | ||| Sbjct 711253 TAGTACATGCCCGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTAAGTTTA 711312 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 | | |||| | |||| | || | |||||| ||||| ||| |||| ||| Sbjct 711313 CTAATGGTCGGGTCAGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATATACGCGCCT 711372 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 |||||||| | ||| | || || | | |||||||| || ||||||||| | Sbjct 711373 CGATCGGCTGACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACACAGTCTTGTACTTT 711432 Query 22334 TGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATC 22393 | | | | | | || || | || |||| | || || ||||| ||| || | Sbjct 711433 TCCTTCACCGCCTCGGGAATGGCTTTGATCTTTTGAACCGACCCACTATCGTTCA----- 711487 Query 22394 AAATTTTTAATCGTA-TCGT----TCCACAAACCGATGGCGGTCAAATCTTTGACCAGAT 22448 |||||| ||| | | || |||| | || | | | | ||||| | ||||| Sbjct 711488 AAATTTGGTTTCGCACTTGTGGCGTCCAGATTCCTAATTCAATTAGCTCTTTCATCAGAT 711547 Query 22449 GACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGA 22508 || || | ||| ||||||| ||| ||||| || | ||| ||||| || || Sbjct 711548 ACTTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTAT 711607 Query 22509 ACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCG 22568 | || |||| ||||||||||| |||| |||||||| || || || || ||||| || | Sbjct 711608 ATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGG 711667 Query 22569 CCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG--CATCGACCA 22626 | | ||||||||| || | || || || | || || ||||||| |||| ||| Sbjct 711668 CTACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATC--CCA 711725 Query 22627 GTCCCACAGATCGGACG---GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCG 22683 ||||| || | |||| | || || ||||||| || | || || | ||| Sbjct 711726 ATCCCAAAGTCCCGACGATGGAGTGACTC---CCCACATGTCAAACTGAAAAATGCCTTT 711782 Query 22684 ACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT 22743 || || || |||| | | || ||||| ||||| || |||| ||| Sbjct 711783 GCTTGCTGGTGATCCTTGGAATGTCTCGTAAGGACCTAATTCTTTTGCAATTTCCATTGA 711842 Query 22744 CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGC 22803 || |||| | || || || ||||| || || || || |||| ||| ||| | Sbjct 711843 CGTTTCCATGGAAGAATAGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGC--GCGCC 711900 Query 22804 GACG--CTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCT 22861 || | || || ||| | ||| | | ||||| || |||| ||||| ||||| Sbjct 711901 GAAGGACTCTCAAACGCGTAATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCA 711960 Query 22862 ATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTC 22921 || |||| |||||||| | || || ||| || || || | ||||| |||| Sbjct 711961 ATGCCGACCGGTCGGTGTCGCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTG 712020 Query 22922 GAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCA 22981 ||| || |||| | ||| | ||||| |||||| | | Sbjct 712021 ACATCAATGACCTTGTTAAGGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGG 712080 Query 22982 AAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCAT 23041 |||| |||| | | | | || |||| || | ||| | || || | |||||| Sbjct 712081 TAGTCAAAAACAC--GGTCATTCA-CAAATTTAGGCAAGGCCACAGATGCCAAATTGCAA 712137 Query 23042 ACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTT 23101 || || || || || || || || || | | |||| |||| |||||| | Sbjct 712138 ACTGCGACTTCATCCGGAGAAGTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGA 712197 Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATT-GCACGAATCCTTGTAGAGCATGTA 23160 || ||||| | ||| |||||| |||||||| ||| | || ||||||||||| || Sbjct 712198 ATTGTGCCAAGATTTTGCTGGTTCGACTTTCGATTCGCA-GCGTCTTTGTAGAGCATATA 712256 Query 23161 CGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC 23220 || || || || | ||| | || | || || ||| | |||||| | || Sbjct 712257 AGGAACACCAGTTTCAATCTGAGCGTCCAGAATAGCAAACCATAGCTGCTGAGCATTAAT 712316 Query 23221 ACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCAC 23279 ||| || | | || || | |||||||| || || || || ||||| ||| Sbjct 712317 -CGTTTTTCGAGCACGTCCATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCAC 712375 Query 23280 CGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCAT 23339 | | || ||| || || |||| || ||||||| | |||||||||| | | ||| Sbjct 712376 CCCAGCATTCGTAAAGTCCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTT---GCCAT 712432 Query 23340 T---TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 | ||| ||||| ||||||| ||||||||||||||||| || ||||||| || |||| Sbjct 712433 TCGCTTCGACGCGCTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGG 712492 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 | || ||| |||||| |||||| |||||||| ||| || || || || |||| Sbjct 712493 CACGATGTAGCTCATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCAT 712552 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 ||||||| || | || | ||||||| || | |||| || || ||||| || | Sbjct 712553 GCCACGGTTCTAAATAGATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACAT 712612 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | || || || | || | || | | ||| || | || || || || | |||| Sbjct 712613 ATCGAGCAGTATCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGG 712672 Query 23577 CGCCCGCCACACTCGAACCTTTT---GCTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 || || | | ||| ||| || || | |||||| | | || || || | Sbjct 712673 TGC---CCCGAATGTAACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCAC 712729 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | || ||||||| || ||| |||||||| || || || || || || || || | Sbjct 712730 CAGCCCATTTCGAAATACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAAT 712789 Query 23694 CCTCTTTGGTCGCGACCAAGAAA-CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAG 23752 | || | | || | |||||| || || || | ||| | || ||| | || | Sbjct 712790 CATCCTGCATTGCCA-AAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTG 712848 Query 23753 AACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATG 23812 || ||||| || | ||||| ||||| | | ||||| | | ||| || |||| Sbjct 712849 AAGAGTGTTGGTGTCGCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGT 712908 Query 23813 GCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGT 23872 || || | |||||| | ||| || || | || || || | ||||| | ||||||| Sbjct 712909 GCAGCTTTAATGTCATTCTTGTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGT 712968 Query 23873 CTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCA 23932 | |||||| || || | || ||||| || | | || ||||| ||| Sbjct 712969 CGCTCGACAACTTTTCCATTTACACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCA 713028 Query 23933 AAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||||||||| | ||||||||| |||| | || || ||||| Sbjct 713029 AAATAGTCATACTCAAAGTCACGGTCGTAGATAATTGCTGAATT 713072 >seq321 Length=1809241 Score = 156 bits (172), Expect = 4e-33 Identities = 182/243 (75%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || |||||||| || ||||| | ||||| || ||| Sbjct 557357 AAAATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAGCCG 557298 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||||| | || | ||||| |||| ||| |||||||||||| | || || ||| Sbjct 557297 TCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTGAC 557238 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||||||||| || || |||||||| ||| | ||||| | | | ||| | || || Sbjct 557237 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGA-TGGACGTACTCTTGCGGACTA 557179 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAA 31424 ||||||||| ||||| ||||| |||||||| ||| | | ||| | || ||| |||| Sbjct 557178 TAACATTCAGAAAGAGTCGACGCTTCATCTTGTATTGCGTCTGCGTGGTGGTGGCAAGAA 557119 Query 31425 GCG 31427 ||| Sbjct 557118 GCG 557116 >seq3042 Length=3267112 Score = 143 bits (158), Expect = 2e-29 Identities = 386/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| ||||| ||||| ||||| | || ||| | || || Sbjct 2153556 TGGCAGATGTACAAGAAGGCGGAAGCCTCGTTCTGGACAGCTGAGGAACTCGATCTAGTA 2153615 Query 57633 AAGGATCTGAGCGATTGGGATTCCCT--CAAAGAATCTGAGAGAAATTTTATTAAACACG 57690 | || || | || |||| ||| |||| || ||| | |||||||||| || | Sbjct 2153616 CACGACCTTAAGGACTGGGCAAGCCTTACAAACAAC--GAGCGCTATTTTATTAAGCATG 2153673 Query 57691 TGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTT 57750 || | || |||||||| || ||||| ||||| || || ||| ||| | || ||| Sbjct 2153674 TGCTTGCTTTTTTCGCAGCTAGTGATGGAATTGTCAATGAAAATCTGGCT--ATGAATTT 2153731 Query 57751 CA-CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808 || ||| |||||||| ||| | ||||| | || || ||||| |||||| | || ||||| Sbjct 2153732 CAGCAATGAAGTGCAGGTGCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATCGCTATTGA 2153791 Query 57809 AAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA-CG 57867 || | || || || |||||||||| || ||||||||||| | |||||| ||| | Sbjct 2153792 GAATATTCACTCGGAGGTGTATTCGCTTCTTATCGATACGTATATCAAGGAC-GCGATTG 2153850 Query 57868 AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGCAGAG 57926 |||| || || || || ||||| || || ||| || | || || || | Sbjct 2153851 AGAAGGACCATCTATTGCGTGCAATTGAAACCATCCCTTGCG-TCACAAAAAAAGCTCAT 2153909 Query 57927 TGGTCAATCAAATGGATAAAAAGCG--CCACGGCCACGTTC----GCCGAGAGGCTAATC 57980 ||| | | || ||| ||| ||||| | ||| | |||||||| | Sbjct 2153910 TGGGCGCTTAAGTGG------TGCGATCCACGAGTATCTTCATATCCGGAGAGGCTGTTA 2153963 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGAT 58039 || || || || || || ||||| || || || ||| || ||| |||| |||||| | Sbjct 2153964 GCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGC-TCAATCTTTTGGCT 2154022 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || |||||||| || || | ||| || ||| | || || || || Sbjct 2154023 TAAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGGATGA 2154082 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||| | || || || ||||| ||||| |||||||| Sbjct 2154083 AGGTATGCACACGGACTTTGCTTGCCTCATGTACTC 2154118 >seq252 Length=912309 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| ||||| || |||||| |||| ||||| || ||||| | || || ||||| Sbjct 785744 AATCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATCACGTTGGATGTGGAACC 785685 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| || | ||| ||| |||||||| | || || || Sbjct 785684 TTCTGACAGCATTGACAATGTCAAGCAAAAAATTCAGGATAAGGAAGGTATTCCACCTGA 785625 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| | || ||||||||||| ||| | || || Sbjct 785624 CCAGCAGCGCTTGATTTTCGCTGGCAAGCAGCTTGAGGA 785586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748781083040