Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq112 140 6e-28 >seq112 Length=380982 Score = 140 bits (154), Expect = 6e-28 Identities = 383/570 (67%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || || || || || || || || |||||| | ||||||||||| | ||| ||| | Sbjct 85867 ACAGGCACGGGTACGCTGTCAATATTTGGAGCTCAAATGAGGTT-TAGCTTA-AGAAAAA 85810 Query 35219 AC-TATT-CCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCT 35276 | |||| ||| | || |||||||| | | |||||| |||| || | ||| || || | Sbjct 85809 ATGTATTTCCATTGCTGACTACCAAAAGGGTATTCTGGCGAGGTGTAGCGGAGGAGCTAT 85750 Query 35277 CGTGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTGGCCAAGAAGAAGATACACATC 35335 |||||| || || || | ||| | || |||| | ||| ||| | || ||||| Sbjct 85749 TGTGGTTTATTAGTGGAGACACAAATGCTCAAACGCTGCAGCAA-AAGGATATTCACATA 85691 Query 35336 TGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAG 35395 ||| | | ||||| || || || | | | || || |||| | | | ||| || Sbjct 85690 TGGGATGGCAATGGATCTCGTGAGTATCTAGATAGCCGAGGTCTCCAGACTCGAGAAGTA 85631 Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT--GATA 35453 |||||| | ||||| || || || || ||||||||||||||||| ||| ||||| || | Sbjct 85630 GGAGATCTTGGACCGGTTTATGGCTTTCAATGGCGTCATTTTGGAGCTAAATATACGA-A 85572 Query 35454 CCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCA-ATTG--GCCAATATACTAAAGA 35510 | || | | ||||||||||| | ||| ||||||| ||| | ||| | |||| Sbjct 85571 CATG-CATGCGGATTATACTGGTCAAGGTGTTGATCAGCTTGAAGAGGTTATTCAAAAG- 85514 Query 35511 CCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATC 35570 || | | | |||| || | | || || || |||| ||||| ||| || | Sbjct 85513 --CTACGTAAGAGTCCAACAGACCGTCGCATTATCCTGTCGGCGTGGAACCCTGCAGACC 85456 Query 35571 TTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAG 35630 | || ||||| | || || ||||||||| | ||||||||||| || ||||||| Sbjct 85455 TCAACGAAATGGCATTACCACCTTGCCACATGTTTTGCCAATTTTATGTAGCAAATGGAG 85396 Query 35631 AATTGTCGTGCCAGTTGTATCA--GCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAA 35688 | |||| || ||| |||| || || || || ||| ||| | |||||||| || || Sbjct 85395 AGCTGTCATGTCAGATGTACCAACGCTCGGCCGACATG--GGGCTTGGCGTGCCATTTAA 85338 Query 35689 TATTGCATCATACTCTCTTCTGACTCATCT 35718 |||||| ||| | || ||||| | ||| Sbjct 85337 TATTGCCAGCTACGCGCTGCTGACGCGTCT 85308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989543908859710