Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq731 89.7 1e-13 >seq731 Length=3487 Score = 89.7 bits (98), Expect = 1e-13 Identities = 255/388 (66%), Gaps = 3/388 (1%) Strand=Plus/Minus Query 16979 TATCATCACGGTGTCCGGGTCCAAGAGATCAATGACGGGACCCGCCCCATTCGCACCATC 17038 ||||| |||||||| || ||| |||||||| || || |||||||| ||| || | Sbjct 876 TATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACAGTA 817 Query 17039 GCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCA 17098 ||| || || | | |||| |||| ||| || || || || ||| || || Sbjct 816 AGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTGTTCCCC 757 Query 17099 CTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCAGC 17158 ||| ||| ||||| || | ||| |||||| | | |||| ||| || | ||| | Sbjct 756 CTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCGGAAAA-CAGGCGAGTCC 698 Query 17159 GGTACGCTG-CCCGCAAGCCTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGGT 17217 || |||||| ||||| | || | ||||| |||||||| || || ||| || || || Sbjct 697 GGCACGCTGGCCCGCTCTC-TGGATGCAATTGCCGACCAAGCAAAACCCGTGACCGTCGT 639 Query 17218 GGTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCAATAGCGCGGTCATCGGCGGCGT 17277 ||||| || | ||| || |||||| | || | | | ||||||||||| Sbjct 638 TGTGCGCGTTGCTCAGGGTGAAACTGAAGCGGAAACAACCTCCAACATTATCGGCGGCGT 579 Query 17278 CAGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGCCAAGGCCCGCTTGGG 17337 | || || || || | || |||||||| || || | | || || ||| | || Sbjct 578 GACAGCTGACGGTAAAAAAACGGGCATGAAAGCGCTGTTATCTGCGCAGTCCCAGCTCGG 519 Query 17338 CGTGGTACCGCGCATCCTCGGCGTGCCG 17365 ||| |||||||| || ||||||||| Sbjct 518 CGTTAAGCCGCGCATTCTTGGCGTGCCG 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113730129415448