Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3042 228 1e-54 seq653 199 5e-46 >seq3042 Length=3267112 Score = 228 bits (252), Expect = 1e-54 Identities = 405/586 (69%), Gaps = 11/586 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||| || || | |||||| | || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| ||||||||||| || || |||||| || || || || || || |||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGC 2153973 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCATGTAT----CCACTTTTGA 33770 |||||| || | || ||||| ||| | | | || || || |||||| | Sbjct 2153972 AGCAAAAGCTAACAGCCTCTCCGGATA--TGAAGATACTCGTGGATCGCACCACTTAAGC 2153915 Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||||| || || ||| | || ||||| || ||||| || ||| || |||| || Sbjct 2153914 GCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCC 2153855 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 || ||| | || || | ||| |||||||| | ||| ||||| ||||| ||||| Sbjct 2153854 TTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATA 2153795 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC--TG 33948 || ||||| || || ||||| ||||||||||| | |||||| | | ||||||||| || Sbjct 2153794 TTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTG 2153735 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 ||| || | || | ||||||||| || ||||||||||| ||||| ||||| || | Sbjct 2153734 CTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAA 2153677 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 ||||| || |||||||| |||| ||| || | ||| || || | || | Sbjct 2153676 GCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGT 2153617 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 || ||| | ||| || ||||||| || || || || ||||| || ||||| | || Sbjct 2153616 GTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCC 2153557 Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 | | || || | || || || || | || || | ||| ||||| Sbjct 2153556 ACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 >seq653 Length=2021493 Score = 199 bits (220), Expect = 5e-46 Identities = 975/1533 (64%), Gaps = 29/1533 (2%) Strand=Plus/Plus Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 ||||| || | ||| || | || |||| || ||| ||||| || || | || ||| Sbjct 711565 AATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTCA 711624 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 || || |||||||| ||||| || ||||| || |||||||| || |||| || ||| Sbjct 711625 TTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATTC 711684 Query 62514 CTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 | | ||| ||||| | | || | || || ||||||| |||||| |||||| Sbjct 711685 CGTAAACC--ATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGACG 711742 Query 62572 GTACA---ACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 | | || | | || | ||| || || || || |||||| Sbjct 711743 ATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGGA 711802 Query 62629 ATGTATCATATGGTCCT--TCCTTCTCAGCTAGTTTACAACT-CGCCTCTAATGCACCGT 62685 |||| || || || ||| | ||| | || | ||| || || || | | | | Sbjct 711803 ATGTCTCGTAAGGACCTAATTCTTTT--GCAA-TTTCCATTGACGTTTCCATGGAAGAAT 711859 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 | ||||| || ||||| || || ||||| || || | || || || ||||| | | Sbjct 711860 AGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGT 711919 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 |||| | |||||||||||| || || | ||| || || ||||| |||| |||| |||| Sbjct 711920 AATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTC 711979 Query 62806 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62865 | | || || ||||||||||| | ||||||||||| | ||| || | || || | Sbjct 711980 GCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAA 712039 Query 62866 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62925 | || | | || ||| ||||| || | || ||| | | ||||| | || Sbjct 712040 GGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCAT 712099 Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 | ||||| | ||| || |||||||||| ||| || || || || |||| | | | Sbjct 712100 TCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAG 712159 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 ||||| || | || ||| | ||| || | || || || | |||||| || | Sbjct 712160 TATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGT 712219 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | |||| || || || || || || || | ||| ||||||||||||||||| Sbjct 712220 TCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 63106 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT---GTATCTCCTT 63161 || | ||| || ||| | | || |||| || || | ||| | | ||| | Sbjct 712280 CGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGT--TTTTCGAGCACGTCCAT 712336 Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCT 63220 || |||||| |||||| ||| ||||| || || |||| | |||| || | || Sbjct 712337 CCT-GTTCGTACTTAGTATATAATGCATCGAATTCATCACCCC-AGCATTCGTAAAGTCC 712394 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC-ACTCGTTTCATA 63278 ||| ||| | |||||| | | ||||| || | || |||| || || |||||| Sbjct 712395 AGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCAT--TCGCTTCGACGCGCTTCATA 712452 Query 63279 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 |||||||| || ||||| || || ||| || | ||| | | | |||| ||| || || Sbjct 712453 AAGAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCC 712511 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 ||||||| | ||| || || | | || ||| | |||||||||||| || || || Sbjct 712512 GTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGAT 712571 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | ||| || || || || ||||| | |||| ||| || | |||| | Sbjct 712572 AGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAA 712631 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCC 63517 ||| | |||||||||||| || || || ||| || ||||| || || || | Sbjct 712632 AACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTT 712691 Query 63518 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | ||||| || || || | || || || || ||| ||| || || | || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 ||| |||| | || ||||| || |||||||| |||||| ||| | ||||| Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 || || | ||| |||| | || || ||||| || | || || | ||||| || Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||| | |||| || | | | ||| ||||| | || | | || || | || Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 |||||||| || ||||| | | ||| || ||||||| || |||| ||| |||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 || | || | || | || ||||| |||||||||| || |||||| || Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||||| ||||| | |||||||| | ||| || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792706459360