Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3042 219 6e-52 seq653 212 8e-50 >seq3042 Length=3267112 Score = 219 bits (242), Expect = 6e-52 Identities = 404/586 (69%), Gaps = 11/586 (2%) Strand=Plus/Minus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| | ||| || || | |||||| | || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 |||||| ||||||||||| || || ||| ||||| || || || ||||| || ||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTG 2153974 Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT----CCACTTTTGA 36346 | ||||| || | || ||||| ||| | | || || || |||||| | Sbjct 2153973 CAGCAAAAGCTAACAGCCTCTCCGGATATGAAG-ATACTCGTGGATCGCACCACTTAAGC 2153915 Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||||| || || ||| | || ||||| || || || || ||| || |||| || Sbjct 2153914 GCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCC 2153855 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 || ||| | || || | ||| ||||| || | ||| ||||| ||||| ||||| Sbjct 2153854 TTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATA 2153795 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC--TG 36524 || ||||| || |||||||| ||||||||||| | |||||| | | ||| ||||| || Sbjct 2153794 TTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTG 2153735 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 ||| || | || | ||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 2153734 CTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAA 2153677 Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTT 36644 ||||| || |||||||| ||||| ||| || | ||| || || | || | Sbjct 2153676 GCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGT 2153617 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 || ||| | ||| || ||||||| || || || || ||||| || ||||| | || Sbjct 2153616 GTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCC 2153557 Query 36705 AGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATT 36750 | | || || | ||||| ||||| | || || | ||| |||| Sbjct 2153556 ACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 >seq653 Length=2021493 Score = 212 bits (234), Expect = 8e-50 Identities = 979/1536 (64%), Gaps = 33/1536 (2%) Strand=Plus/Plus Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 |||||| || | ||| || | || |||| || ||| ||||| || || | || || Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 65305 ||| || |||||||| ||||| || ||||| || |||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 65306 TCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | | ||| ||||| | | || | || || | ||||||| |||||| ||||| Sbjct 711684 CCGTAAACC--ATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGAC 711741 Query 65364 GGTACA---ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 | | | || || | ||| || || || || |||||| Sbjct 711742 GATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGG 711801 Query 65421 TATGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| ||||| || ||| | ||| | || | ||| || || | | | | Sbjct 711802 AATGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTTCCATGGAAGAAT 711859 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 | ||||| || || || || || ||||| || || | || | || ||||| | | Sbjct 711860 AGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGT 711919 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 |||| | |||||||||||| || || | ||| || || ||||| |||| |||| |||| Sbjct 711920 AATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTC 711979 Query 65599 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 65658 | | || || ||||||||||| | ||||||||||| | ||| || | || || | Sbjct 711980 GCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAA 712039 Query 65659 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCTCAT 65715 | || | | || ||| ||||| || | || ||| | | ||||| || |||| Sbjct 712040 GGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCAT 712099 Query 65716 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 | ||||| | ||| || |||||||||| ||| ||||| || || |||| | | Sbjct 712100 ---TCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAG 712156 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | ||||| || | || ||| | ||| || | || || || | |||||| | Sbjct 712157 AAGTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCT 712216 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | || |||| || || || || || || || | ||| |||||||||||||| Sbjct 712217 GGTTCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCT 712276 Query 65896 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTT 65954 ||| || | ||| || ||| | | || |||| || || | ||| | | | | Sbjct 712277 GAGCGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGTT--TTTCGAGCACGTC 712333 Query 65955 TCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAAT 66011 || | ||||| ||||| ||| ||||| || || ||||| |||| || | | Sbjct 712334 CATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAG-CATTCGTAAAGT 712392 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC-ACTCGTTTCA 66069 ||||| ||| | |||||| | | ||||| || | || |||| || || |||| Sbjct 712393 CCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCAT--TCGCTTCGACGCGCTTCA 712450 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 |||||||||| || ||||| || || ||| || ||||| | || | |||| ||| || Sbjct 712451 TAAAGAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTG 712509 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||||||| | ||| || || | | || ||| |||||||||||| || || Sbjct 712510 CCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAG 712569 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 || || | ||| || || || || ||||| | |||| ||| || | |||| Sbjct 712570 ATAGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTA 712629 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCT 66307 |||| | |||||||||||| || ||||| |||| || ||||| ||| || || || || Sbjct 712630 AAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGA-ATGTAACT 712688 Query 66308 TCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 | ||||| || || || | || || || || ||| ||| || || | Sbjct 712689 GTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACA 712748 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || ||| |||| | |||||||| || || ||||| ||||||| ||| | || Sbjct 712749 CGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAG 712808 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 ||| || || | ||| |||| || || ||||| || | || || | ||||| Sbjct 712809 AAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTG 712868 Query 66488 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 66547 ||||| | |||| || | | | ||| ||||| | || | | || || | Sbjct 712869 GGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTT 712928 Query 66548 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 66607 |||||||||| || ||||| | | ||| || ||||||| || || | || || Sbjct 712929 GTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATT 712988 Query 66608 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 66667 || || | || | || | || ||||| |||||||||| || |||||| Sbjct 712989 TACACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTC 713048 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 || ||||| ||||| | || ||||||| ||| || Sbjct 713049 ACGGTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658146785720080