Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq321 107 2e-18 >seq321 Length=1809241 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | |||| ||| |||||||| ||||||||||| || Sbjct 557128 CCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCA 557187 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||||||||| || |||||| | |||||||| ||||| || || || Sbjct 557188 AGAGTACGTCCA-TCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||||| || || | | || | |||| | |||||||| Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 557306 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || || ||||| || ||||| Sbjct 557307 GTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 557354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044393070400