Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq653 279 7e-70 seq3042 237 2e-57 >seq653 Length=2021493 Score = 279 bits (308), Expect = 7e-70 Identities = 991/1533 (65%), Gaps = 27/1533 (2%) Strand=Plus/Plus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 |||||| || | ||| || | || |||| || ||| |||||||| || | ||||| Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||| || |||||||| ||||| || ||||| ||||||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG- 79243 | | ||| | | | | || | || || | |||||||||||||| | |||| Sbjct 711684 CCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGACGA 711743 Query 79244 -GGACA-ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTA 79301 ||| || ||| | ||| | || | ||| || || || || ||||||| | | Sbjct 711744 TGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGGAA 711803 Query 79302 TGTTTCATAAGGTCCT--TCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||| || ||||| ||| | ||||| || | ||| || || | | || Sbjct 711804 TGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTTCCATGGAAGAATAG 711861 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||| || || ||||| || ||||| || || | || | || ||||| | ||| Sbjct 711862 TAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGTAA 711921 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 || | |||||||||||| || || | ||| || || ||||| |||| |||| |||| | Sbjct 711922 TTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTCGC 711981 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || || ||||||||||| | ||||||||||| | ||| || | || || || Sbjct 711982 ATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAAGG 712041 Query 79540 TTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596 || | | |||||| || ||||| || | | ||| | | ||||| | || Sbjct 712042 TTGCGCGTCACTATT---TTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCA 712098 Query 79597 ATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 | ||||| | ||| || |||||||||| ||| ||||| || || |||| | | Sbjct 712099 TTCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAA 712158 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | ||||| || | ||| ||| | || || | ||| || || | |||||| || Sbjct 712159 GTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGG 712218 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || |||| || || || || || || || | ||| |||||||||||||||| Sbjct 712219 TTCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGA 712278 Query 79777 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT----TATAGACTTGTATCTCT 79831 | || | ||| || ||| | | || |||| || || | | || | | || Sbjct 712279 GCGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGTTTTTCGA---GCACGTCC 712334 Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 | || || |||| | ||||||||| ||||| || || ||||| |||| | || Sbjct 712335 ATCCTGTT-CGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATTCGTAAAGTC 712393 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 |||| ||||| ||||| | | ||||| |||| | | || || ||||||| Sbjct 712394 CAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAA 712453 Query 79952 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 ||||||| || ||||| || || ||| || | ||| | || | ||| ||| || || Sbjct 712454 AGAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCCG 712512 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||||| | ||| || || | | || ||| | |||||||||||| || || || Sbjct 712513 TGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATA 712572 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | ||| || || || || ||||| | |||| ||| || | |||| || Sbjct 712573 GCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAA 712632 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCC 80189 || | |||||||||||| || ||||| |||| || ||||| ||| || || || || Sbjct 712633 ACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGA-ATGTAACTGTT 712691 Query 80190 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | ||||| || || || | || || || || ||| ||| || || | || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| |||| | |||||||| || || ||||| |||||| ||| | ||||| Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || || | ||| |||| || || ||||| || | || || | ||||| || Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| | |||| |||| | | ||| ||||| | || | || || || | || Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 |||||||| ||| ||||| | | ||| || ||||||| || || | || ||||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 || | || | || | || ||||| |||||||||| || |||||| || Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||||| ||||| | || ||||||| ||| || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 >seq3042 Length=3267112 Score = 237 bits (262), Expect = 2e-57 Identities = 409/587 (70%), Gaps = 13/587 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||| || || | |||||| || || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||||| ||||||||||| || || ||| ||||| || || || || || || ||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTG 2153974 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG-TCATGTATC----CACTTTTG 50147 | ||||| || | || ||||| ||| || | | || || ||| ||||| | Sbjct 2153973 CAGCAAAAGCTAACAGCCTCTCCGGATA--TGAAGATACTCGTGGATCGCACCACTTAAG 2153916 Query 50148 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207 ||||||| || || ||| | || ||||| || ||||| || ||| || |||| || Sbjct 2153915 CGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTC 2153856 Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267 || ||| | || || | ||| |||||||| | ||| ||||| ||||| ||||| Sbjct 2153855 CTTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAAT 2153796 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC--T 50325 || ||||| || || ||||| ||||||||||| | |||||| | | ||||||||| | Sbjct 2153795 ATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATT 2153736 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | ||| || | ||| | ||||||||| || ||||| ||||| ||||| ||||| || Sbjct 2153735 GCTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCA 2153678 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445 | ||||| || ||||||| |||||| ||| || | ||| || || | || Sbjct 2153677 AGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCG 2153618 Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 | || ||| | ||| || ||||||| || || || || ||||| || ||||| | | Sbjct 2153617 TGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGC 2153558 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || | || || | || || || || | || || | ||| ||||| Sbjct 2153557 CACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240410425680