Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3042 140 3e-28 >seq3042 Length=3267112 Score = 140 bits (154), Expect = 3e-28 Identities = 305/443 (69%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 || ||||| | |||||| || || |||||||| | | || ||||||| || || || Sbjct 2154085 CCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTTC 2154026 Query 13953 tttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 || | |||||| |||| |||| ||||| || || || || || ||||| ||||||||||| Sbjct 2154025 TTAAGCCAAAAGATTG-AGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 14012 CGCTATTAATCGTTCTCC--AAACGATGCTTTT--TTGTTCGATATCCATTTTCTAGCCC 14067 |||| | | ||||| | | || | | | | | ||| ||| || |||| Sbjct 2153966 AGCTAACAGCC--TCTCCGGATATGAAGATACTCGTGGATCGCA--CCACTTAAGCGCCC 2153911 Query 14068 ATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCT 14127 | | || ||||||| | | || || |||||||| ||| |||| || ||||||| Sbjct 2153910 AATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCT 2153851 Query 14128 CTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGT 14184 | | | | ||||| || | ||||| ||||| |||| | |||| || ||||| || | Sbjct 2153850 CAATCGCGTCCTTGATAT--ACGTATCGATAAG-AAGCGAATACACCTCCGAGTGAATAT 2153794 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAG- 14243 | || ||||| || ||||| || || || || | ||| || | | || ||||| | Sbjct 2153793 TCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGC 2153734 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14303 | |||| | | ||| ||||||||| || || |||||||||||||| ||||| || | Sbjct 2153733 TGAAATTCATAG-CCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGC 2153675 Query 14304 ATGTTTTTAATAAAGTATTGCTC 14326 | | |||||||| || |||| Sbjct 2153674 ACATGCTTAATAAAATAGCGCTC 2153652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709038750800