Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3042 149 6e-31 >seq3042 Length=3267112 Score = 149 bits (164), Expect = 6e-31 Identities = 307/442 (69%), Gaps = 16/442 (4%) Strand=Plus/Minus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || ||||| | |||||| || || |||||||| | | || ||||||| || || || Sbjct 2154085 CCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTTC 2154026 Query 13741 tttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | |||||| |||| ||| |||||| || || || || || ||||| ||||||||||| Sbjct 2154025 TTAAGCCAAAAGATTG-AGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAA 2153967 Query 13800 CGCTATTAGTCGTTCTCC--AAACGATGCTTTTT-TGTTTGATATCCATTTTCTAGCCCA 13856 |||| || | ||||| | | || | | | || | | ||| || ||||| Sbjct 2153966 AGCTAACAGCC--TCTCCGGATATGAAGATACTCGTGGATCGCA-CCACTTAAGCGCCCA 2153910 Query 13857 TTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTC 13916 | || ||||||| | | || || ||||| |||||| |||| ||| |||||||| Sbjct 2153909 ATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCTC 2153850 Query 13917 TTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTA-TACATTTCAGAGTGTATGTT 13973 | | | ||||| || | ||||| ||||| |||| | |||| || ||||| || || Sbjct 2153849 AATCGCGTCCTTGATAT--ACGTATCGATAAG-AAGCGAATACACCTCCGAGTGAATATT 2153793 Query 13974 TTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAG-T 14032 || ||||| || ||||| || || ||||| | ||| |||| | || || || | | Sbjct 2153792 CTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGCT 2153733 Query 14033 AAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATA 14092 |||| | |||| |||||||| ||||| |||||||||||||| ||||| || | | Sbjct 2153732 GAAATTCATA-GCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGCA 2153674 Query 14093 TGTTTTTAATAAAGTATTGCTC 14114 | |||||||| || |||| Sbjct 2153673 CATGCTTAATAAAATAGCGCTC 2153652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569883777680