Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq653 298 7e-76 seq3042 219 6e-52 >seq653 Length=2021493 Score = 298 bits (330), Expect = 7e-76 Identities = 995/1533 (65%), Gaps = 27/1533 (2%) Strand=Plus/Plus Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 |||||| || | ||| || | ||| |||| || ||| ||||| || || | ||| || Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 ||| || |||||||| ||||| || ||||| || |||||||| || |||| ||| ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 71268 TCTAAGACCATGTG--ATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGAT 71325 | | ||||||| || |||| |||| || | ||||||| |||||| |||| Sbjct 711684 CCGTAAACCATGTTGCATAACCTTTT-TCTTG-AGTGCATCCCAATCCCAAAGTCCCGAC 711741 Query 71326 GGTACA---ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | | | || ||||| || || || ||||||| Sbjct 711742 GATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGG 711801 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 |||| ||||| || ||| || || || | ||| || || | | ||| Sbjct 711802 AATGTCTCGTAAGGACCTAATTCTTTTGCAATTTCCATTGACGTTTCCATGGAAGAATAG 711861 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| || || ||||| || ||||| || || | || || || ||||| | ||| Sbjct 711862 TAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGTAA 711921 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 || | |||||||||||| || || | ||| || |||||||| |||| |||| ||||| | Sbjct 711922 TTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTCGC 711981 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 | || || ||||||||||| | ||||||||||| | ||| || | || || || Sbjct 711982 ATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAAGG 712041 Query 71623 TTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 || | | ||||| ||| ||||| || | | ||| | | ||||| | || Sbjct 712042 TTGCGCGTCACTAT---TTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCA 712098 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 | ||||| |||||| |||||||||| ||| ||||| || || |||| | | Sbjct 712099 TTCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAA 712158 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | ||||| || | ||| ||| | ||| || | || || || | |||||| || Sbjct 712159 GTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGG 712218 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 || |||| || || || || || || ||| | ||| |||||||||||||||| Sbjct 712219 TTCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGA 712278 Query 71860 GATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTAT-TATATTCTTGTATCTCTTTT 71917 | || | ||| || ||| | | || |||| || || | ||| | | || | Sbjct 712279 GCGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGTTTTTCGAGCACGTCCATC 712337 Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCA 71976 || |||||| | ||||||||| ||||| || || |||| |||||| || | |||| Sbjct 712338 CT-GTTCGTACTTAGTATATAATGCATCGAATTCATCACCCC-AGCATTCGTAAAGTCCA 712395 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 || ||| |||||||| | | ||||| |||| | | || || ||||||||| Sbjct 712396 GGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCATAAAG 712455 Query 72037 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 ||||| || ||||| || || ||| || | ||| | || | ||| ||| || || Sbjct 712456 AGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCCGTG 712514 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||||||| | ||| || || | | || ||| | |||||||||||| || || || || Sbjct 712515 ATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATAGC 712574 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | ||| || || || || ||||| | |||| ||| || | |||| |||| Sbjct 712575 AAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAAAC 712634 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCAC 72274 | |||||||||||| || ||||| |||| || ||||| ||| || || || || Sbjct 712635 GCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGA-ATGTAACTGTTTG 712693 Query 72275 TGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 | ||||| || ||| || | || || || || ||| ||| || || | || | Sbjct 712694 TCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGCAC 712753 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 || |||| | |||||||| || || ||||| ||||||| ||| | ||||| | Sbjct 712754 ATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAAGC 712813 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | || | ||| |||| || || ||||| || | || || | ||||| |||| Sbjct 712814 ATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGTAA 712873 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT- 72513 | | |||| |||| | | ||| ||||| | || | || || || |||| ||| Sbjct 712874 AAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTT-TA-ATGTCATTCTTGTG 712931 Query 72514 -ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 ||||||| ||| ||||| | | ||| || ||||||| || || | || ||||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 || | || | || | || ||||| |||||||||| || |||||| || Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 72633 TTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||||| ||||| | |||||||||| ||| || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 >seq3042 Length=3267112 Score = 219 bits (242), Expect = 6e-52 Identities = 404/586 (69%), Gaps = 11/586 (2%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| ||| ||||| | |||||| | || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||||| ||||||||||| || || ||| ||||| || || || || || || ||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTG 2153974 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT----CCACTTTTGA 42253 | ||||| || | || ||||| ||| | | || || || |||||| | Sbjct 2153973 CAGCAAAAGCTAACAGCCTCTCCGGATATGAAG-ATACTCGTGGATCGCACCACTTAAGC 2153915 Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||||| || || ||| | || ||||| || ||||| || ||| || |||| || Sbjct 2153914 GCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCC 2153855 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 || ||| | || || | ||| |||||||| | ||| ||||| || || ||||| Sbjct 2153854 TTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATA 2153795 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC--TG 42431 || ||||| || || ||||| ||||||||||| | ||||| | ||||| ||||| || Sbjct 2153794 TTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTG 2153735 Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 ||| || | ||| | |||||| || || ||||| ||||| ||||| ||||| || | Sbjct 2153734 CTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAA 2153677 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTT 42551 ||||| || |||||||| |||| ||| | | ||| || || | || | Sbjct 2153676 GCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGT 2153617 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 || ||| | ||| || | ||||| || || ||||| ||||| || ||||| | || Sbjct 2153616 GTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCC 2153557 Query 42612 AGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 | | ||| || | ||||| || || | || || | ||| ||||| Sbjct 2153556 ACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112673223120