Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18]
3,162 sequences; 75,321,785 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq112 93.3 6e-14
seq653 84.2 3e-11
>seq112
Length=380982
Score = 93.3 bits (102), Expect = 6e-14
Identities = 176/254 (69%), Gaps = 4/254 (2%)
Strand=Plus/Minus
Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284
||||| |||||||| | || |||||||| ||||||| || ||| ||||| || || ||
Sbjct 85471 TGGAACCCTGCAGACCTCAACGAAATGGCATTACCACCTTGCCACATGTTTTGC-CAATT 85413
Query 70285 TTAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCC 70343
||| | | | |||| | ||||||| ||||| || | ||||||||||| |
Sbjct 85412 TTATGTAGCAA-ATGGAGAGCTGTCATGTCAGATGTACCAACGCTCGGCCGACATGGGGC 85354
Query 70344 TCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTA 70403
| || || || ||||| ||||| ||||| | || |||||| | ||||||| | |
Sbjct 85353 TTGGCGTGCCATTTAATATTGCCAGCTACGCGCTGCTGACGCGTCTTGTTGCTCAAGTGA 85294
Query 70404 CCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATC 70463
| || | || | || || | ||| ||||||||| || || | ||| ||||||
Sbjct 85293 CTGGATTAGAACCTGGTGAATTTATCCACGTCATTGGCGATGCGCATATCTATCTAAATC 85234
Query 70464 ACATCGAGCCATTA 70477
|| |||||||| ||
Sbjct 85233 ACGTCGAGCCACTA 85220
>seq653
Length=2021493
Score = 84.2 bits (92), Expect = 3e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099
||||||||||| ||||| ||| ||| | || | || ||| | ||||| ||||
Sbjct 711428 TACAAGACTGTGTGGGAAATTAAACAGAAGGCCGTGCTAGACATGTCAGCCGATCGAGGC 711369
Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159
| || ||| |||||| || ||| | || | || |||| || || ||| |||
Sbjct 711368 GCGTATATTTGCCAGAGCCAGTCGCTGAACATTCACATTGCTGACCCGACCATTAGTAAA 711309
Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215
| || || || ||||| || || ||||| ||||| ||||||||||||||||||||
Sbjct 711308 CTTACGTCCATGCACTTCTATGCTTGGAAAAAGGGACTCAAGACGGGCATGTACTA 711253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741029909635120
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |