Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq731 125 1e-24 >seq731 Length=3487 Score = 125 bits (138), Expect = 1e-24 Identities = 179/251 (71%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 15842 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGAGGGCACCCGCGTCATTTCCACC 15901 || ||||| ||||| |||| || | ||||| ||||| ||||||||| ||||| || Sbjct 879 GATTATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACA 820 Query 15902 GTATCCACCGCCATTGTTGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAATCTTC 15961 ||| ||| || ||||| | |||||||| || | | ||||| |||||| | ||| Sbjct 819 GTAAGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTGTTC 760 Query 15962 CCCCTCAATAAACCGGTACTGATTACCAATGTGCAGAGTGCAATTGCAAAGGCCGGTAAA 16021 ||||||||||||||||| ||| ||||| | |||| || || | | ||| | || | Sbjct 759 CCCCTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCGGAAA-ACAGGCGAG 701 Query 16022 AAAGGCACGCTGGCGGCGTCGTTGCAGGCTATCGCCGACCAGTCAAAACCGGTCACCGTT 16081 ||||||||||| || || | || || |||||||| ||||||| || ||||| Sbjct 700 TCCGGCACGCTGGCCCGCTCTCTGGATGCAATTGCCGACCAAGCAAAACCCGTGACCGTC 641 Query 16082 GTCGTACGTGT 16092 || || || || Sbjct 640 GTTGTGCGCGT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104463277387224