Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3042 174 1e-38 >seq3042 Length=3267112 Score = 174 bits (192), Expect = 1e-38 Identities = 398/591 (67%), Gaps = 16/591 (3%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | || ||||| || ||||| |||||||| | ||| || ||||| ||||||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAA 2154055 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | | ||||| ||||| || || || || |||| |||||| || | |||| || || || Sbjct 2154054 AGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTG-AGCAGAATGAGCCT 2153996 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || || || ||||| ||||| |||| || ||| || ||| | | Sbjct 2153995 GAGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTCCGGATATGAAGA---- 2153940 Query 13322 TTACTC-----TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 ||||| || |||||| ||||| | ||||||| | | ||||| || Sbjct 2153939 -TACTCGTGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGG 2153881 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 |||| ||||| |||| || | || || | ||| ||||| ||||| || | Sbjct 2153880 TTTCAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGAT-A 2153822 Query 13437 ATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACAT 13495 | |||| | |||| || || |||||||| || || || ||||| || || || ||||| Sbjct 2153821 AGAAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAG 2153762 Query 13496 CTAGCCTCTGATACCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | |||||||| ||||| ||||| | | |||| | || | ||||| || || || Sbjct 2153761 CGAGCCTCTGGCACCTGCACTTCATTGCTGAAATTCATA-GCCAGATTTTCATTGACAAT 2153703 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 || |||||||| || ||||||||||| | ||||||||||| | ||||| | || Sbjct 2153702 TCCATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGT 2153643 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 | || ||| || || || | | || ||| | |||||| | ||||| || || Sbjct 2153642 AAGGCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGA 2153583 Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 || | |||||||| |||||| ||| | ||| | | ||||||||| Sbjct 2153582 GGCTTCCGCCTTCTTGTACATCTGCCACACATCGTGTTCCTGAATGGGAAA 2153532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965791285124