Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq731 125 1e-24 >seq731 Length=3487 Score = 125 bits (138), Expect = 1e-24 Identities = 278/414 (67%), Gaps = 31/414 (7%) Strand=Plus/Minus Query 14896 GATTTTCACCACGGCACGCAGGTCATCGAAATTAATGACGGTACGCGTGTTATTTCCACA 14955 |||| ||||||||| || ||| | || || || || || || || |||||| ||| Sbjct 879 GATTATCACCACGGTGTGCGTGTCGTTGAGATCAACGATGGCACCCGCCCTATTTCAACA 820 Query 14956 GTAGCGACTGCGGTCGTCGGCATGGTTTGTACAGCCAGCGATGCAGATGCCACGCTATTT 15015 ||| || || | || | ||||| ||||| | | ||||||||||| | | || Sbjct 819 GTAAGCACGGCAATTGTAAGTATGGTCTGTACCGGCGATGATGCAGATGCGTCCGTGTTC 760 Query 15016 CCCCTCAATGAACCGGTACTGATTACCAATGTGCAAAGCGCCATTGCGAAAGCCGGTAAA 15075 ||||||||| ||||||| ||| ||||| | |||| | ||||| | |||| | || | Sbjct 759 CCCCTCAATAAACCGGTCCTGCTTACCGACGTGCTGACCGCCAGCG-GAAAACAGGCGAG 701 Query 15076 AAAGGCACGCTGGCTGCATCACTGCAGGCCATCGCAGACCAGTCAAAACCCGTCACTGTT 15135 ||||||||||| || ||| | || || || ||||| |||||||||| || || Sbjct 700 TCCGGCACGCTGGCCCGCTCTCTGGATGCAATTGCCGACCAAGCAAAACCCGTGACCGTC 641 Query 15136 GTTGTACGTGTTG---AGGATGGAACCGGCGATGACGAGGAAGCTGCGCTCGCACAGACT 15192 ||||| || |||| ||| || ||| ||| | |||| ||| || Sbjct 640 GTTGTGCGCGTTGCTCAGGGTGAAAC------TGAAGCGGAA-----------ACA-AC- 600 Query 15193 GTTTCCAACATTATCGGAGG---TACGGATGAGAACGGTAAATACACCGGTATCAAGGCT 15249 |||||||||||||| || || | || |||||||| | || || || || || Sbjct 599 --CTCCAACATTATCGGCGGCGTGACAGCTG---ACGGTAAAAAAACGGGCATGAAAGCG 545 Query 15250 CTCCTGACTGCTCAGGCCGTCACCGGCGTCAAGCCGCGTATTCTTGGGGTGCCG 15303 || | |||| ||| || |||||| |||||||| |||||||| |||||| Sbjct 544 CTGTTATCTGCGCAGTCCCAGCTCGGCGTTAAGCCGCGCATTCTTGGCGTGCCG 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97909923466712