Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq428 172 9e-39 seq41 98.7 2e-16 >seq428 Length=1405462 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | | |||||| ||||| ||||| || ||||||||||| ||||| Sbjct 1013848 GCTAAGCGTCACCGTAAAGTTCTTCGTGATAATATCCAGGGCATCACCAAGCCCGCTATT 1013789 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| ||||||||| | |||||| | | || || |||| | Sbjct 1013788 CGTCGACTAGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGGACTTATTTACGAGGAGACT 1013729 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || | |||||| | | || || | ||| || | ||| || ||| Sbjct 1013728 CGTGGTGTTCTCAAAGTGTTCCTCGAAAATGTCATTCGTGACTCTGTTACCTACACTGAG 1013669 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| || | |||||| | || ||||| ||||| |||||||| Sbjct 1013668 CATGCACGTCGCAAAACTGTAACGGCTATGGATGTTGTGTATGCTTTGAAGCGTCAAGGT 1013609 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||||||||| Sbjct 1013608 CGCACCTTGTATGGTTTTGG 1013589 >seq41 Length=984709 Score = 98.7 bits (108), Expect = 2e-16 Identities = 182/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| || || || ||||| || || || || ||||| ||||| Sbjct 289128 GCCAAACGTCACCGCAAGGTGCTCCGTGACAACATTCAGGGTATAACGAAGCCTGCTATT 289069 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| | || || | | || || || | Sbjct 289068 CGTCGTCTAGCTCGTCGTGGTGGTGTAAAGCGAATTTCCGGGCTCATTTACGAGGAAACA 289009 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||||| | || || | | ||| || | |||| | || || || || Sbjct 289008 AGAGGTGTTTTGAAGGTGTTTCTTGAAAACGTAATTCGTGATTCAGTCACTTACACGGAA 288949 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || | ||||| |||| || || | || || |||||| Sbjct 288948 CACGCACGTCGCAAAACTGTTACTGCTATGGACGTCGTTTACGCTCTCAAGCGACAAGGC 288889 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || ||| | ||| Sbjct 288888 CGTACTTTGTACGGCTTCGGAGGATAA 288862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072308961266