Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3042 89.7 5e-13 >seq3042 Length=3267112 Score = 89.7 bits (98), Expect = 5e-13 Identities = 309/480 (64%), Gaps = 16/480 (3%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||| | || ||||| || |||| ||||||||||| ||| || | ||||| |||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAA 2154055 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | | | ||| ||||| | || | ||| || | |||||| ||||| ||| |||| ||| Sbjct 2154054 AGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCT 2153996 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG--TATGTAGATT 21644 || || ||||| ||||| || |||||||| || | | | || ||| |||| |||| Sbjct 2153995 GAGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCC--TCTCCGGATATGAAGATA 2153938 Query 21645 C---TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTG 21701 | | ||| | ||| || ||||| | || |||| | | | ||| || | Sbjct 2153937 CTCGTGGATCGCA---CCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGG 2153881 Query 21702 TATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 | ||||| || || ||||| | || ||| | || | || Sbjct 2153880 TTTCAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGATAA 2153821 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 ||||| || || || ||||| || || || || ||||| ||||| ||||| | Sbjct 2153820 GAAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGC 2153761 Query 21822 TTGCCTCTGAACATTGAACCTC--GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTAT 21879 ||||||| || || || | ||| || | ||||| |||||||| || || Sbjct 2153760 GAGCCTCTGGCACCTGCACTTCATTGCTGAAATTCAT--AGCCAGATTTTCATTGACAAT 2153703 Query 21880 TCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGT 21939 ||||||||| || || ||||| || | | || || |||||||| || ||||| | ||| Sbjct 2153702 TCCATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGT 2153643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879776620880