Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3042 224 1e-53 seq653 201 1e-46 >seq3042 Length=3267112 Score = 224 bits (248), Expect = 1e-53 Identities = 377/541 (70%), Gaps = 11/541 (2%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| ||| || || | |||||| || || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| ||||||||||| || || |||||| || || || || || || |||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGC 2153973 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCATGTAT----CCACTTTTGA 33492 |||||| || | || ||||| ||| | | | || || || |||||| | Sbjct 2153972 AGCAAAAGCTAACAGCCTCTCCGGATA--TGAAGATACTCGTGGATCGCACCACTTAAGC 2153915 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||||| || || ||| | || ||||| || ||||| || ||| || |||| || Sbjct 2153914 GCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCC 2153855 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 || ||| | || || | ||| |||||||| | ||| ||||| ||||| ||||| Sbjct 2153854 TTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATA 2153795 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC--TG 33670 || ||||| || || ||||| ||||||||||| | |||||| | | ||| ||||| || Sbjct 2153794 TTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTG 2153735 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 ||| || | |||| ||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 2153734 CTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAA 2153677 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33790 ||||| || |||||||| |||| ||| || | ||| || || | || | Sbjct 2153676 GCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGT 2153617 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 || ||| | ||| || ||||||| || || || || ||||| || ||||| | || Sbjct 2153616 GTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCC 2153557 Query 33851 A 33851 | Sbjct 2153556 A 2153556 >seq653 Length=2021493 Score = 201 bits (222), Expect = 1e-46 Identities = 973/1533 (63%), Gaps = 27/1533 (2%) Strand=Plus/Plus Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 |||||| || | ||| || | || |||| || ||| ||||| || || | || || Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 ||| || |||||||| ||||| || ||||| || |||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 62462 TCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 | | ||| ||||| | | || | || || | ||||||| |||||| ||||| Sbjct 711684 CCGTAAACC--ATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGAC 711741 Query 62520 GGTACA---ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62576 | | | || || | ||| || || || || |||||| Sbjct 711742 GATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGG 711801 Query 62577 TATGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| ||||| || ||| | ||| | || | ||| || || | | | | Sbjct 711802 AATGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTTCCATGGAAGAAT 711859 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 | ||||| || || || || || ||||| || || | || | || ||||| | | Sbjct 711860 AGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGT 711919 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 |||| | |||||||||||| || || | ||| || || ||||| |||| |||| |||| Sbjct 711920 AATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTC 711979 Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814 | | || || ||||||||||| | ||||||||||| | ||| || | || || | Sbjct 711980 GCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAA 712039 Query 62815 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62874 | || | | || ||| ||||| || | || ||| | | ||||| | || Sbjct 712040 GGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCAT 712099 Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 | ||||| | |||||| |||||||||| ||| ||||| || || |||| | | | Sbjct 712100 TCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAG 712159 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 ||||| || | || ||| | ||| || | || || || | |||||| || | Sbjct 712160 TATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGT 712219 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | |||| || || || || || || || | ||| ||||||||||||||||| Sbjct 712220 TCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 63055 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT---GTATCTCCTT 63110 || | ||| || ||| | | || |||| || || | ||| | | ||| | Sbjct 712280 CGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGT--TTTTCGAGCACGTCCAT 712336 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCC 63169 || |||||| ||||| ||| ||||| || || |||| | |||| || | ||| Sbjct 712337 CCT-GTTCGTACTTAGTATATAATGCATCGAATTCATCACCCC-AGCATTCGTAAAGTCC 712394 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC-ACTCGTTTCATA 63227 ||| ||| | |||||| | | ||||| || | || |||| || || |||||| Sbjct 712395 AGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCAT--TCGCTTCGACGCGCTTCATA 712452 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 |||||||| || ||||| || || ||| || | ||| | || | |||| ||| || || Sbjct 712453 AAGAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCC 712511 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||||| | ||| || || | | || ||| | |||||||||||| || || || Sbjct 712512 GTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGAT 712571 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | ||| || || || || ||||| | |||| ||| || | |||| | Sbjct 712572 AGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAA 712631 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||| | |||||||||||| || || || ||| || ||||| || || || || Sbjct 712632 AACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTT 712691 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | ||||| || || || | || || || || ||| ||| || || | || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 ||| |||| | || ||||| ||||| ||||| |||||| ||| | ||||| Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 || || | ||| |||| || || ||||| || | || || | ||||| || Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| | |||| || | | | ||| ||||| | || | | || || | || Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 |||||||| || ||||| | | ||| || ||||||| || || | || |||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 || | || | || | || ||||| |||||||||| || |||||| || Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| ||||| | || ||||||| ||| || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922578011920