Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq653 334 2e-86 seq112 156 1e-32 seq3042 96.9 9e-15 seq209 84.2 6e-11 >seq653 Length=2021493 Score = 334 bits (370), Expect = 2e-86 Identities = 650/951 (68%), Gaps = 14/951 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || ||||| || |||||| | | |||||| || || | |||||| | || || Sbjct 712874 TTTACCCACGCGACACCAACACTCTTCAATGCAGGTACACCGCGTCCACAATTATCGTCA 712815 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | |||| |||| ||||| || || ||||| | ||| |||||||| | Sbjct 712814 TGCTTTCTTTTGGCAATGCAGGATGATTCAATAGAAGGTATATATGATACACTTAAACAA 712755 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 ||||| |||||| || || || || ||||| || || ||||| | ||||| Sbjct 712754 TGTGCGTGTATTTCGAAATGGGCTGGTGGGATTGGAGTTAGTATGCACAACATCCGTGCG 712695 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||| |||||||||||||| ||||| || | |||||||| | |||| ||| | || Sbjct 712694 ACA-AACAGTTACATTCGGGGCACCAACGGCTCATCGAATGGAATCATTCCAATGTTGCG 712636 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || ||| | ||||||| | || || || || ||||| || ||||||||||| |||| Sbjct 712635 CGTTTTTAATGATACTGCTCGATATGTGGATCAAGGTGGTGGTAAGCGCAAAGGATCGTT 712576 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 |||||| ||| | || || ||||||||| ||||||| ||||| || | || || || Sbjct 712575 TGCTATCTATTTAGAACCGTGGCATGCCGATGTTTTTGAATTTCTGGATTTGCGAAAGAA 712516 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||||| || ||| | ||||| |||||| ||||||||||||| ||| | | || | Sbjct 712515 TCACGGCAAT-GAGCTACATCGTGCCCGTGATTTGTTCTATGCACTATGGATACCGGATC 712457 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 |||||||||||||| || || | || ||| ||||| || || ||||| | Sbjct 712456 TCTTTATGAAGCGCGTCGAAGCGAATGGCAAGTGGAGTCTCTTCTGTCCGAACGAAGCGC 712397 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || |||| ||| |||||||| || | | ||| |||| ||||| ||| || Sbjct 712396 CTGGACTTTACGAATGCTGGGGTGATGAATTCGATGCATTATATACTAAGTACGAACAGG 712337 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 | ||| ||||| || || ||| || ||| ||||||||||||| || |||| | | Sbjct 712336 ATGGACGTGCTCGAAAAACGATTAATGCTCAGCAGCTATGGTTTGCTATTCTGGACGCTC 712277 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAAC 364203 ||||||| || || || |||||| | |||||||| | ||| || || ||||| ||| Sbjct 712276 AGATTGAAACTGGTGTTCCTTATATGCTCTACAAAGACGC-TGCGAATCGAAAGTCGAAC 712218 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| | ||||| ||||||| |||||| |||| ||| | || ||||| || Sbjct 712217 CAGCAAAATCTTGGCACAATTCGTTCGAGCAATTTATGCTGCGAAGTGATGGAATATACT 712158 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 |||| || || || || || || | || || | || | || ||||| || Sbjct 712157 TCTCCGGATGAAGTCGCAGTTTGCAATTTGGCATCTGTGGCCTTGCCTAAATTTGTGAAT 712098 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGT----AACCTATCATGCTACTTGCAA 364379 || || ||||||| ||||| | | || ||||| || || | || |||| Sbjct 712097 GACCGTGTTTTTGACTACCAGAAATTGTACGACGTGGTGAAAATA----GTGACGCGCAA 712042 Query 364380 TCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATAT 364439 || ||||||| || || ||||||||||| | ||||| || || || || Sbjct 712041 CCTTAACAAGGTCATTGATGTCAATTATTATCCCGTCATAGAAGCTGAAAAGTCCAACAT 711982 Query 364440 GCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 ||| || || ||| | || |||| || ||||| || ||||| | ||||| Sbjct 711981 GCGACACCGACCGGTCGGCATTGGCGTCCAGGGACTGGCTGATGCGTTTAT 711931 >seq112 Length=380982 Score = 156 bits (172), Expect = 1e-32 Identities = 400/595 (67%), Gaps = 28/595 (5%) Strand=Plus/Minus Query 111370 TGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAGCAAAAA-ATGTAAAAAT 111427 ||||||||||| | ||| |||||||| | ||| |||||||||| || | | || Sbjct 85749 TGTGGTTTATTAGTGGAGACACAAATGCTCA--AACGCTGCAGCAAAAGGATATTCACAT 85692 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTG----TCGACAACG 111483 |||||||| |||||||| ||||| | ||||||| ||||| |||| | Sbjct 85691 ATGGGATGGCAATGGATCTCGTGAGTATCTAGATAGCCGAGGTCTCCAGACTCGA----G 85636 Query 111484 AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA 111543 ||| ||| ||||| ||||| ||||| || ||||||||||| || ||||| || | || | Sbjct 85635 AAGTAGGAGATCTTGGACCGGTTTATGGCTTTCAATGGCGTCATTTTGGAGCTAAATATA 85576 Query 111544 AAACCATGCA--CGACTCATA-TGATTCACAGGGAACTGATCAATTACAGAATGTCATTG 111600 | |||||| || | ||| || | || || |||||| | | | || ||| Sbjct 85575 CGAACATGCATGCGGATTATACTGGT---CAAGGTGTTGATCAGCTTGAAGAGGTTATTC 85519 Query 111601 ATCAAATTAAG-AACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | || || | || | ||||| ||||||||||| || || |||||||| | Sbjct 85518 AA-AAGCTACGTAAGAGTCCAACAGACCGTCGCATTATCCTGTCGGCGTGGAACCC---T 85463 Query 111660 GCAT---TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACAC 111716 ||| | | |||||||| | ||||| || || | | ||||| ||||||||| Sbjct 85462 GCAGACCTCAACGAAATGGCATTACCACCTTGCCACATGTTTTGCCAATTTTATGTAGCA 85403 Query 111717 GACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 | || ||| ||||| || ||||| || || || || || || || ||||| || || Sbjct 85402 AATGGAGAGCTGTCATGTCAGATGTACCAACGCTCGGCCGACATGGGGCTTGGCGTGCCA 85343 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 ||||||||||| || ||||| || || || | | | ||||| | || | || Sbjct 85342 TTTAATATTGCCAGCTACGCGCTGCTGACGCGTCTTGTTGCTCAAGTGACTGGATTAGAA 85283 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA 111896 || |||||||| || ||||| || || ||||||||| | || ||| ||| | || || Sbjct 85282 CCTGGTGAATTTATCCACGTCATTGGCGATGCGCATATCTATCTAAATCACGTCGAGCCA 85223 Query 111897 CTTAAAACACAGTTGAAGCGCAAACCA-TACGATTTCCCAACGATTCATATCAAT 111950 || ||| || |||| ||| | ||| | |||| |||||| | || || ||| Sbjct 85222 CTACAAAAGCAATTGACGCGTACGCCACGTCCATTT-CCAACGCTGCACATTAAT 85169 >seq3042 Length=3267112 Score = 96.9 bits (106), Expect = 9e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || || || ||||| || || || |||| || ||||||||||||| Sbjct 2153964 GCTTTTGCTGCAGTAGAGGGTATTTTTTTCTCAGGCTCATTCTGCTCAATCTTTTGGCTT 2154023 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || |||| | ||||| ||||| | |||||||||||| | ||||| || ||||| Sbjct 2154024 AAGAAGCGTGGTCTGATGCCTGGTCTTAGCTTTTCAAATGAGCTCATTAGTCGGGATGAA 2154083 Query 22621 GGTCTTCATACCGATTTTGCGTG 22643 ||| | || || || ||||| || Sbjct 2154084 GGTATGCACACGGACTTTGCTTG 2154106 >seq209 Length=46136 Score = 84.2 bits (92), Expect = 6e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 145574 TTGGAACACTTCTTCGTCTGGATC-ATACACCGCAAGAAGGTATGCACCATATACACCAG 145632 |||| ||| ||| ||| ||||| | |||| || || | ||| || ||||| || |||| Sbjct 31162 TTGGTACATTTCCGTGTCAGGATCGAAACAC-GCCAGCAAGTACGCGCCATAGACTCCAG 31104 Query 145633 TACGTTTTCCGCGACCGGTATACCCCGCA---ATTGGTACAAGATCACAACTATCACCCA 145689 |||| || || ||||| ||| |||| || || || | ||| ||| || | Sbjct 31103 TACGCTTGCCACGACC---ATAGAACGCACCGATCGGGACCAAGTCAGCTGAATCGCCAA 31047 Query 145690 TTCCGGCAAGATAATCCTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCAT 145749 | ||| | ||||||||||| || || |||||||| ||| |||| || |||| ||||||| Sbjct 31046 TCCCGTCCAGATAATCCTTCTTCAGCTTTAGCCACTTGTGAGAGCGGTTCGCGGGTTCAT 30987 Query 145750 AGCTAGAGTTATCGTCCAATGATTTTACCATTAGCCCCTC 145789 | ||| | | | ||| | ||| ||||| || || || Sbjct 30986 ACGTAGCCTCCTTTTTCAAGGTTTTCACCATCAGACCTTC 30947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303300797072684