Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq321 86.0 5e-12 >seq321 Length=1809241 Score = 86.0 bits (94), Expect = 5e-12 Identities = 173/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 115262 AATGCCATTTATAAGA-GATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAAC 115320 || ||||||| | | | ||| |||||||| ||||| ||||| || || || || || || Sbjct 557379 AACGCCATTTTTCAAATGATAGAAAATGCAGATTTTCGTCAAGACCCTTACAGGCAAGAC 557320 Query 115321 CATTACCGTCGAAACGGAGTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCG 115379 ||| || | || |||| | |||| ||| |||| || || || |||||| | Sbjct 557319 CATCACGCTGGACGTGGAGCCGTCGGACAGCATTG-ACAATGTCAAGCAGAAAATTCAGG 557261 Query 115380 ATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAG 115439 | || ||||| | || ||| ||||| | || |||| ||| ||||| || | |||| Sbjct 557260 ACAAGGAAGGTATTCCACCTGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAG 557201 Query 115440 ATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGA 115499 ||| || | || || ||||||||||| |||||||| || | ||| | || ||| Sbjct 557200 ATGGACGTACTCTTGCGGACTATAACATTCAGAAAGAGTCGACGCTTCATCTTGTATTGC 557141 Query 115500 GATTGCGAGGAGG 115512 | |||| || || Sbjct 557140 GTCTGCGTGGTGG 557128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327608571440