Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq321 107 2e-18 seq653 102 8e-17 >seq321 Length=1809241 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | |||||||| || |||||||| || || | | Sbjct 557128 CCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTC-CGC 557186 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || || || || ||||||||||| || | || | |||||||||||| || || Sbjct 557187 AAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||||||||||| | || | | || | | ||| | Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 557306 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | ||| || || || || || || |||||||||||||| Sbjct 557307 GTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 557354 >seq653 Length=2021493 Score = 102 bits (112), Expect = 8e-17 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| |||||| | | ||| |||||||||||||| ||||| |||| |||||| || Sbjct 711547 TACTTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTA 711606 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 | || || | || || || ||||||| || ||||| || | ||| || ||||| Sbjct 711607 TATGGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGG 711666 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || |||| || ||||| || | || || | | | | | || ||| || | | ||||| Sbjct 711667 GCTACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCCCAA 711726 Query 145232 TCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 ||||| || ||| | || | || |||||||||| |||| |||||||| | ||| Sbjct 711727 TCCCAAAGTCCCGACGATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTT 711786 Query 145289 GCGGG 145293 || || Sbjct 711787 GCTGG 711791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994143694080