Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1883 131 1e-25 seq3053 118 7e-22 seq666 109 4e-19 seq3159 104 2e-17 seq3090 98.7 7e-16 seq6 96.9 2e-15 >seq1883 Length=606 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 142 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 83 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 82 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 48 >seq3053 Length=362 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 221 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 280 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||||||||| Sbjct 281 TTATCCATTCATGCGCGTCACTAGTTAGATGACGA 315 >seq666 Length=329719 Score = 109 bits (120), Expect = 4e-19 Identities = 78/90 (87%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 |||||||||||||||| ||||||||| ||||||||||| || |||||| |||||| Sbjct 153161 CGTTCCCTTGGCTGTGAATTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATC 153102 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||||||||||| ||||||||||| Sbjct 153101 CATTCATGCGCGTCACTAGTTAGATGACGA 153072 >seq3159 Length=1063 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 741 CTCTATTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 800 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 801 ACCAATATTTAGCTTTA 817 >seq3090 Length=915709 Score = 98.7 bits (108), Expect = 7e-16 Identities = 78/94 (83%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||||||| | |||||||| ||| ||||||| || |||||| | Sbjct 453885 AAACCCGTTCCCTTGGCTGTAGGCTCGCTAGACAGTCGATAGGGACAGCGGGAATCTCAT 453826 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 |||||| |||||||||||||||| ||||| |||| Sbjct 453825 TAATCCATTCATGCGCGTCACTAGTTAGAAGACG 453792 >seq6 Length=2952 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 1853 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCAC 1912 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 1913 GCCAGTATTTAGCCTT 1928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934292181622