Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq653 219 5e-52 seq3042 214 2e-50 >seq653 Length=2021493 Score = 219 bits (242), Expect = 5e-52 Identities = 978/1533 (64%), Gaps = 27/1533 (2%) Strand=Plus/Plus Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 |||||| || | ||| || | || |||| || ||| ||||| || || | || || Sbjct 711564 AAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCGATTGATTC 711623 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 ||| || |||||||| ||||| || ||||| || |||||||| || |||| || ||| Sbjct 711624 ATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGTAGCGAATT 711683 Query 62317 TCTAAGACCGTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62374 | | ||| ||||| | | || | || || | ||||||| |||||| ||||| Sbjct 711684 CCGTAAACC--ATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGTCCCGAC 711741 Query 62375 GGTACA---ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62431 | | | || || | ||| || || || || |||||| Sbjct 711742 GATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGATCCTTGG 711801 Query 62432 TATGTATCGTATGGTCCT--TCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| ||||| || ||| | ||| | || | ||| || || | | | | Sbjct 711802 AATGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTTCCATGGAAGAAT 711859 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 | ||||| || || || || || ||||| || || |||| | || ||||| | | Sbjct 711860 AGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAACGCGT 711919 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 |||| | |||||||||||| || || | ||| || || ||||| |||| |||| |||| Sbjct 711920 AATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGGTGTC 711979 Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669 | | || || ||||||||||| | ||||||||||| | ||| || | || || | Sbjct 711980 GCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTGTTAA 712039 Query 62670 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62729 | || | | || ||| ||||| || | || ||| | | ||||| | || Sbjct 712040 GGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGGTCAT 712099 Query 62730 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 | ||||| | ||| || |||||||||| ||| ||||| || || |||| | | | Sbjct 712100 TCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGAGAAG 712159 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 ||||| || | || ||| | ||| || | || || || | |||||| || | Sbjct 712160 TATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGCTGGT 712219 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 | |||| || || || || || || || | ||| ||||||||||||||||| Sbjct 712220 TCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAATCTGAG 712279 Query 62910 ATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 || | ||| || ||| | | || |||| || || | ||| | | | | | Sbjct 712280 CGTCCAGAATAGCAAACCATAGCTGCT-GAGCATTAATCGTT--TTTCGAGCACGTCCAT 712336 Query 62969 CTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAGTCCA 63025 | | ||||| ||||| ||| ||||| || || ||||| |||| || |||||| Sbjct 712337 CCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAG-CATTCGTAAAGTCCA 712395 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC-ACTCGTTTCATAA 63083 || ||| | |||||| | | ||||| || | || |||| || || ||||||| Sbjct 712396 GGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCAT--TCGCTTCGACGCGCTTCATAA 712453 Query 63084 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 ||||||| || ||||| || || ||| || | ||| | || | |||| ||| || || Sbjct 712454 AGAGATCCGGTATCCATAGTGC-ATAGAACAAATCACGGGCACGATGTAGCTCATTGCCG 712512 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 ||||||| | ||| || || | | || ||| | |||||||||||| || || || Sbjct 712513 TGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGATA 712572 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | ||| || || || || ||||| | |||| ||| || | |||| || Sbjct 712573 GCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAAA 712632 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCC 63321 || | |||||||||||| || ||||| |||| || ||||| ||| || || || || Sbjct 712633 ACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGA-ATGTAACTGTT 712691 Query 63322 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | ||||| || || || | || || || || ||| ||| || || | || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 ||| |||| | |||||||| || || ||||| ||||||| ||| | ||||| Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 || || | ||| |||| || || ||||| || | || || | ||||| || Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 ||| | |||| || | | | ||| ||||| | || | | || || | || Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 |||||||| || ||||| | | ||| || ||||||| || || | || |||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 || | || | || | || ||||| |||||||||| || |||||| || Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 63682 TTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| ||||| | || ||||||| ||| || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTT 713084 >seq3042 Length=3267112 Score = 214 bits (236), Expect = 2e-50 Identities = 404/587 (69%), Gaps = 13/587 (2%) Strand=Plus/Minus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| | ||| || || | |||||| | || || ||||| | || || ||||| || || Sbjct 2154092 GTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACC 2154033 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 32793 |||||| ||||||||||| || || ||| ||||| || || || ||||| || ||||||| Sbjct 2154032 ACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGAGCCTGAGAAAAAAATACCCTCTACTG 2153974 Query 32794 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCATGTAT----CCACTTTTG 32848 | ||||| || | || ||||| ||| | | | || || || |||||| | Sbjct 2153973 CAGCAAAAGCTAACAGCCTCTCCGGATA--TGAAGATACTCGTGGATCGCACCACTTAAG 2153916 Query 32849 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908 ||||||| || || ||| | || ||||| || || || || ||| || |||| || Sbjct 2153915 CGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTC 2153856 Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 || ||| | || || | ||| ||||| || | ||| ||||| ||||| ||||| Sbjct 2153855 CTTCTCAATCGCGTCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAAT 2153796 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC--T 33026 || ||||| || |||||||| |||||||| || | |||||| | | ||| ||||| | Sbjct 2153795 ATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATT 2153736 Query 33027 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33086 | ||| || | || | ||||||||| || ||||| ||||| ||||| ||||| || Sbjct 2153735 GCTGAAATTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCA 2153678 Query 33087 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 33146 | ||||| || |||||||| |||| ||| || | ||| || || | || Sbjct 2153677 AGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCG 2153618 Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 | || ||| | ||| || ||||||| || || || || ||||| || ||||| | | Sbjct 2153617 TGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGC 2153558 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || | || || | ||||| ||||| | || || | ||| ||||| Sbjct 2153557 CACACATCGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606955695200