Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq321 120 3e-22 seq252 109 5e-19 >seq321 Length=1809241 Score = 120 bits (132), Expect = 3e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || ||||||| | || |||||| |||| Sbjct 557355 AATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAGCCGTC 557296 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||| || || || || ||||| ||||| ||||| ||||| |||||||||||| Sbjct 557295 GGACAGCATTGA--CAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTGAC 557238 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| ||||| || | ||||||| || ||| | | || || Sbjct 557237 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGACTAT 557178 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| || ||||| ||| Sbjct 557177 AACATTCAGAAAGAGTCGACGCTTCAT 557151 >seq252 Length=912309 Score = 109 bits (120), Expect = 5e-19 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||||| || ||||| |||||||||||||| || ||||||| | || ||||| Sbjct 785746 GGAATCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATCACGTTGGATGTGGAA 785687 Query 25053 TCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | ||||||| || || || || ||||||||||| || || ||||| ||||||| Sbjct 785686 CCTTCTGACAGCATTGA--CAATGTCAAGCAAAAAATTCAGGATAAGGAAGGTATTCCAC 785629 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 ||||||| ||||| | ||||| || ||||| || | || |||| || | | | | Sbjct 785628 CTGACCAGCAGCGCTTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGATCCCTTGCAG 785569 Query 25171 ATTACAATATTCAAAA 25186 | ||||| ||||| || Sbjct 785568 ACTACAACATTCAGAA 785553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311300893030