Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3042 188 8e-43 >seq3042 Length=3267112 Score = 188 bits (208), Expect = 8e-43 Identities = 418/615 (68%), Gaps = 18/615 (3%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| | ||| |||||||| || || | |||||| || || || | |||||| | Sbjct 2154116 GTACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATT--T 2154059 Query 93142 GAAT-GTTAA-ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| | ||| ||| || | ||| || || ||||| |||||||| ||||| ||| || | Sbjct 2154058 GAAAAGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGA-GCAGAATGA 2154000 Query 93200 -CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || ||||| ||||| || || || ||||| || | | | || | | | || Sbjct 2153999 GCCTGAGAAAAAAATACCCTCTACTGCAGCAAAAGCTAACAGCCTCTCCGGATA---TGA 2153943 Query 93259 GGAATTACTGCTG-ATC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 || |||| || ||| || || | ||||||| |||||||| | | ||||| Sbjct 2153942 AGA--TACTCGTGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGG 2153885 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCG 93373 | ||||| || || ||||| | || ||| || || || || |||||| Sbjct 2153884 ATGGTTTCAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCG 2153825 Query 93374 ATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAA 93433 || | || ||||||| || || || | |||||| || || ||||| || ||||||||| Sbjct 2153824 ATAAGAAGCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAA 2153765 Query 93434 CATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGAC 93492 || | ||| || | | ||||||||| ||| |||| || | |||||||||||||| Sbjct 2153764 CAGCGAGCCTCTGGCACCTGCACTTCATTGCTGAAAT-TCATAGCCAGATTTTCATTGAC 2153706 Query 93493 TATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC 93552 || ||||| ||||| |||||||| | | |||||| ||||||| ||| | | Sbjct 2153705 AATTCCATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTT 2153646 Query 93553 TTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 | |||| | |||| || || || | | ||||||| ||| || | ||||| || Sbjct 2153645 TGTAAGGCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAA 2153586 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 ||| ||||| || || |||||||| | ||| | || || | ||||| ||||| | || Sbjct 2153585 CGAGGCTTCCGCCTTCTTGTACATCTGCCACACATCGTGTTCCTGAATGGGAAAGAGCAC 2153526 Query 93673 AAAACGATTAGGGTT 93687 || |||||||| || Sbjct 2153525 GAAGCGATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838790076880