Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1336 104 5e-17 seq553 89.7 1e-12 >seq1336 Length=1546205 Score = 104 bits (114), Expect = 5e-17 Identities = 433/671 (65%), Gaps = 42/671 (6%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || ||||||||||||||||| || | || | || ||||| || | || ||| Sbjct 25619 CTTTCTGGTGGTTGGAAGATGAAACTAGAGCTGGCACGTGCCATGCTTCAAAAGGCTGAT 25678 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | | || || ||||| || || |||||| |||| || ||||| |||||||| | Sbjct 25679 ATTTTGCTTCTGGATGAACCGACGAACCACTTGGATGTCAAGAACGTGGCCTGGCTGGAA 25738 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 || ||||| | |||| | || || |||| |||| || || || |||||||| || Sbjct 25739 CAGTATCTAACGAATCTGCACAACGTGACTTCTATCATGGTTTCCCATGACTCTGGATTT 25798 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAG 279941 | || | || ||| || |||||||||||||||| | || ||||| ||| |||| Sbjct 25799 TTGGACACTGTCTGCACTAACATCATTCACTATGAGACCCGTAAGTTGAAGATCTACAAG 25858 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGAC 280001 || || || ||| || || | | || || ||||| || || || || Sbjct 25859 ------GGAAATCTCTCTAAATTTGTCGAACAGAAGCCCGAGGCCAAGGCATATTACGAG 25912 Query 280002 CTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCAC- 280060 || || || || || ||| | | ||||| || || || ||||| | | |||| Sbjct 25913 CTTGAGTCCGACAACGTCAAATTTGTCTTCCCGGAACCCGGTTTTCTTGCTGATATCAAG 25972 Query 280061 ATCAAAGGATCGCGCAATCATGAAGCTCCGT--GGCGTCTCCTTTGCTTATCCCAATGGC 280118 | ||| || || | || || |||| | || |||| || ||| | | Sbjct 25973 AACAAGGGTAAGC-CGATTAT------CCGTTTGACGAAC----TGCTCATACCAGTACC 26021 Query 280119 C--------CCAA--CATC--TT--CAGCAGTGTCAACTCGCAGGTTTCTATGAACTCAC 280164 | |||| | || || || || | ||| || || || || || | Sbjct 26022 CAGGTACACCCAAACCGTCGATTAACAACATT-TCAG-TCACATGTG-CTTTGTCGAGCC 26078 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | |||| || |||| || || ||||| |||||||| || || |||||| | |||| | Sbjct 26079 GTATTGCCGTGCTTGGTCCTAACGGTGCTGGTAAGTCGACGCTTATCAAAATGTTGACAG 26138 Query 280225 GCGAGACCCAGGCCACTGAGGGGTCC-GTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 | || || | || ||| || | || ||||| ||||| |||||| | || || Sbjct 26139 GTGAAGTTGAGCCAAC-GAGCGGGCAAGTGTGGAAACATCCTTCGATGCGGTTTGCCTAT 26197 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || ||||| ||||||||||||||||||||| ||||| || ||| | || || ||| Sbjct 26198 GTGGCTCAACACGCTTTCCACCACATCGAGTCGCACCTTGATGAGACCGCGAATCAGTAC 26257 Query 280344 ATTCAGTGGCG 280354 ||||||||||| Sbjct 26258 ATTCAGTGGCG 26268 >seq553 Length=2240492 Score = 89.7 bits (98), Expect = 1e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 |||| || || || || | |||||||| || ||| || | |||||||||||||| | Sbjct 1511588 TTAAAGTGGCGCAATTGGCGGGTTATGTGTCTGAACACTCCGCGTACCATCACGGTGAAC 1511529 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || || ||| |||||||| |||| ||| || || || || || Sbjct 1511528 AGAGTTTGCAAGGCTGTATCGTAAATATGGCACAAGACTTTGTTGGTAGCAATAATATTC 1511469 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 | || || ||| | |||||| |||||| | ||||| |||| || ||||| Sbjct 1511468 ATCTGTTGTCCCCTATCGGTCAATTTGGTACACGTCTGATGGGCGGTAAGGA 1511417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795159119242