Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq321 156 8e-33 seq1336 86.0 1e-11 >seq321 Length=1809241 Score = 156 bits (172), Expect = 8e-33 Identities = 178/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||||||| | || ||||| |||||||| || |||||||| || | Sbjct 557128 CCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCA 557187 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || | || ||||| |||||| Sbjct 557188 AGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGA 557247 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || |||||| || ||| |||| | | || || Sbjct 557248 ATACCTTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACG 557307 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTAT 68472 |||| |||||||| || || || |||||||||||||| ||||||||| | |||| || Sbjct 557308 TCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATT-TTCTATCAT 557364 >seq1336 Length=1546205 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| |||||||| || | |||| || ||||| ||| || ||||||||||| Sbjct 26268 CGCCACTGAATGTACTGATTCGCGGTCTCATCAAGGTGCGACTCGATGTGGTGGAAAGCG 26209 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 || || || || || || | ||||| ||||| |||||||| || | || || Sbjct 26208 TGTTGAGCCACATAGGCAAACCGCATCGAAGGATGTTTCCACACTTGCCCGCTCGTTGGC 26149 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | | || || || | | ||||| ||||| | ||| || ||||| || || |||| | Sbjct 26148 TCAACTTCACCTGTCAACATTTTGATAAGCGTCGACTTACCAGCACCGTTAGGACCAAGC 26089 Query 225161 ACGCCAATCCGG 225172 ||| |||| ||| Sbjct 26088 ACGGCAATACGG 26077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921585972874640