Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq321 82.4 5e-11 >seq321 Length=1809241 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || || | || ||||| ||||| || |||| ||| ||| Sbjct 557357 AAAATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGA-GCC 557299 Query 21891 G-CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | | || | | | | || | ||||| |||||| || || || ||| | ||||| Sbjct 557298 GTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCTG- 557240 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||| | || || ||||||||||| || || |||||| | ||| | || || Sbjct 557239 --ACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGA 557182 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || || || |||||| | ||||| ||| | || || || Sbjct 557181 CTATAACATTCAGAAAGAGTCGACGCTTCATCTTGTATTGCGTCTGCGTGGTGG 557128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358110998989348