Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq321 114 1e-20 seq252 95.1 1e-14 >seq321 Length=1809241 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || | ||| | ||| || ||||| |||||||| || || Sbjct 557127 ACCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGC 557186 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| || || || ||||| | || |||||||| ||||| || || Sbjct 557187 AAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||| || || || | | |||| | |||| | | || || Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCAC 557306 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || | || ||||| || || || || || ||||||||||| Sbjct 557307 GTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCAT 557354 >seq252 Length=912309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| ||||| || || |||||| | || | ||||| ||||| || ||||| ||||| || Sbjct 785585 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCTTCCTT 785644 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || ||| ||||| || | | |||| | |||| | | ||| || |||| || | Sbjct 785645 ATCCTGAATTTTTTGCTTGACATTGTCAATGCTGTCAGAAGGTTCCACATCCAACGTGAT 785704 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||||||||| ||| || ||||||||||||||| Sbjct 785705 GGTCTTGCCGGTCAAAGTCTTCACAAAAATCTGCATG 785741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420118209333144