Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq731 134 3e-27 >seq731 Length=3487 Score = 134 bits (148), Expect = 3e-27 Identities = 264/389 (68%), Gaps = 1/389 (0%) Strand=Plus/Plus Query 25106 AGAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTG 25165 |||||||||||||| ||||||||| |||||| | | |||||| || |||||||| Sbjct 501 AGAATGCGCGGCTTAACGCCGAGCTGGGACTGCGCAGATAACAGCGCTTTCATGCCCGTT 560 Query 25166 TACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCTCGTCGGCGTCCTTG 25225 | || ||||| | |||||| |||||| | ||| ||||| || || | | | Sbjct 561 TTTTTACCGTCAGCTGTCACGCCGCCGATAATGTTGGAGGTTGTTTCCGCTTCAGTTTCA 620 Query 25226 CCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTCGAGC 25285 || | || |||||||| |||||||||| || || | || | | | || || || || Sbjct 621 CCCTGAGCAACGCGCACAACGACGGTCACGGGTTTTGCTTGGTCGGCAATTGCATCCAGA 680 Query 25286 GTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCGTCAGC 25345 | |||| ||||||||| || ||| | || ||| || | | |||| || ||| Sbjct 681 GAGCGGGCCAGCGTGCCGGACTCGCCTG-TTTTCCGCTGGCGGTCAGCACGTCGGTAAGC 739 Query 25346 AGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGACGACG 25405 || || || ||||||| || ||| || ||| || || || | | || ||||| | Sbjct 740 AGGACCGGTTTATTGAGGGGGAACACGGACGCATCTGCATCATCGCCGGTACAGACCATA 799 Query 25406 CCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGATGACG 25465 | | | ||||| |||| ||| |||||| ||| |||||||| || | ||| Sbjct 800 CTTACAATTGCCGTGCTTACTGTTGAAATAGGGCGGGTGCCATCGTTGATCTCAACGACA 859 Query 25466 CGTACGCCGTGGTGGTAATCCTGCGGCAT 25494 || || |||||||| |||||||| | ||| Sbjct 860 CGCACACCGTGGTGATAATCCTGAGCCAT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117281996042288